Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq379 91.5 8e-14 seq479 89.7 3e-13 seq601 87.8 9e-13 >seq379 Length=19898295 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || | |||| | || |||||||||| ||||||||||||||||||||| Sbjct 15802701 AATAAAAGATTGACGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 15802760 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||| ||||| Sbjct 15802761 GACGCTCTAACCAGCTGAGCTATGGGGCC 15802789 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||| |||||| || ||||| | || |||||||||| |||||||| Sbjct 15770389 ATAGA-TTAATCAAAAATGAAGATCATTTGGCTCCAGAGAGGATCGAACTCACGACCTTC 15770331 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 ||||||||||||||||||||| |||| |||||||| Sbjct 15770330 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTA 15770296 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 15034100 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 15034159 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 15034160 TGAGCTATGGAGCCG 15034174 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 15036252 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 15036311 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 15036312 CTGAGCTATGGGGCC 15036326 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 15771113 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 15771054 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 15771053 CTGAGCTATGGGGCC 15771039 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 15104416 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 15104357 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 15104356 CTGAGCTA 15104349 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 15769774 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15769715 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 15769714 TGAGCTATGGAGCCG 15769700 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 15803443 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15803502 Query 11516 TGAGCTA 11522 ||||||| Sbjct 15803503 TGAGCTA 15803509 >seq479 Length=1427557 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1327179 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1327238 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| |||||| Sbjct 1327239 CTGAGCTATGGGGCCG 1327254 >seq601 Length=12921292 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4817135 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4817194 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 4817195 TGAGCTATGGAGCCG 4817209 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487165354216