Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1237 179 6e-41 seq848 176 7e-40 seq346 156 7e-34 seq799 131 3e-26 >seq1237 Length=1577 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| || ||||||||||| || ||| Sbjct 1043 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCATC 1102 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 1103 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 1162 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 1163 CGTGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 1222 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 1223 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 1282 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 1283 CGCACGCTGTACGGCTTCGGAGGCTAA 1309 >seq848 Length=3946 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || ||||||||||| || || |||||||| || ||| Sbjct 1109 GCCAAGCGTCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATTACCAAGCCTGCCATC 1168 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| ||||| || ||||| |||||| | || || || |||| || || | Sbjct 1169 CGCCGTCTGGCCCGTCGCGGAGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAAACC 1228 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| |||| | ||||| ||| |||||||| |||||| | || || || Sbjct 1229 CGTGGTGTTCTGAAAGTGTTCCTGGAGAACGTTATCCGTGATGCGGTAACTTACACGGAA 1288 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| | |||||| | || ||||| |||| ||||| ||| Sbjct 1289 CACGCGAAGCGTAAGACCGTCACCGCTATGGATGTGGTGTATGCCCTGAAGCGTCAGGGC 1348 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 1349 CGCACCCTGTACGGTTTCGGAGGTTAA 1375 >seq346 Length=4026748 Score = 156 bits (172), Expect = 7e-34 Identities = 182/243 (75%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | | || || ||||||||||| |||||||||||||| || || Sbjct 1346440 GCCAAGCGTCACCGGA-AGGTGTTGCGCGATAACATCCAGGGAATCACCAAGCCGGCCAT 1346498 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| ||||| |||||| ||||||| || | || || || | Sbjct 1346499 CCGTCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAAC 1346558 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | |||||| ||| ||| || | || ||| | || ||||| Sbjct 1346559 CCGCGGCGTGCTGAAGGTGTTCCTCGAGAACGTCATTCGCGACGCTGTGACGTACACCGA 1346618 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || |||| || || || Sbjct 1346619 GCACGCCAAGCGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 1346678 Query 16672 CCG 16674 || Sbjct 1346679 TCG 1346681 >seq799 Length=4356 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || |||||||| |||||||||||||| || ||| Sbjct 4160 GCCAAGCGTCATCGTAAAGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCGGCCATC 4219 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| |||| || | |||| ||||| | Sbjct 4220 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCGGGTCTCATCTACGAAGAAACG 4279 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | || | | | ||||||| |||||| || ||||||||| Sbjct 4280 CGCGGCGTGCTGAAAGTGTTTTTGGAAAATGTTATCCGTGATGCGGTCACCTATACCGAA 4339 Query 16613 CACGCTAAACGTAAGAC 16629 ||||| || || ||||| Sbjct 4340 CACGCCAAGCGCAAGAC 4356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074042487338