Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq391 333 3e-86 seq302 168 8e-37 >seq391 Length=2819257 Score = 333 bits (368), Expect = 3e-86 Identities = 1188/1850 (64%), Gaps = 24/1850 (1%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 ||||| || || || | ||||||||| || || || || || | |||| ||| || Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATGGAT 62252 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 || | |||| || | ||||| || ||||| | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 | | | || || | || || || ||||| || || |||| || | ||| |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 | || || ||||| || | |||||| || || ||||||||||| || || || || Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 |||||||| || || | || | || | | ||||| | | || || || || Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTC 157013 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 62552 || | |||||||||| || |||| |||||| || |||||| Sbjct 157012 AGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATA 156953 Query 62553 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 62612 || || || | |||||| | || || ||||| ||||| |||| | || | || Sbjct 156952 CCCTTGCTCACCGGAGATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTCG 156893 Query 62613 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 62672 || || || || | ||||| || || ||||| || || |||| || ||| || | ||| Sbjct 156892 CAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTGC 156833 Query 62673 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 || ||| || || | || | | | || ||||| || || | || || || Sbjct 156832 GCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACG 156773 Query 62733 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62792 || |||||||| || | || | | | || ||| | ||||| || | || || | Sbjct 156772 CCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAG 156713 Query 62793 TTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGT 62849 || | || ||||| || || | || | | || ||| ||| | || || ||||| Sbjct 156712 TTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTCAGC 156656 Query 62850 TTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGA 62906 || |||||| | | || || |||||||||| |||| || ||||| Sbjct 156655 TTCGCGAAATCATACGTACGGTCGGGCTGGACGAACATGTTCAGCGCAATCGAGGCCAGG 156596 Query 62907 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 || || || || || || | | || || || | | ||||| |||||||| ||| Sbjct 156595 TTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAG 156538 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 |||||||| || || | |||||||| || || || || ||||| ||||| || | Sbjct 156537 AGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACA 156478 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63084 | ||| | || || || || | ||| ||||| || ||||| ||| | | | | Sbjct 156477 GCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTGCG 156418 Query 63085 CCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 |||||| | ||| | | | | || |||| || || ||||| ||||| Sbjct 156417 CCTTTACCTGGCGGAT--GAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCGAA 156360 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 ||| || ||||| || | ||||||| ||||| || | ||| |||||||| |||| Sbjct 156359 CTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACGT 156300 Query 63203 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 | ||| ||| ||| || | ||| || ||||| || ||||| || || ||| | || Sbjct 156299 TTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGTC 156240 Query 63263 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63322 || | | ||||| || || || || || || ||||| | ||| | | | ||| Sbjct 156239 CCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACATC 156180 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 |||||||| |||| ||| ||||| | | || ||||| || || || |||||||| Sbjct 156179 GCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGATC 156120 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 | ||| | || || || || || || | || ||| || | | ||||| || || || Sbjct 156119 GACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTCC 156060 Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATT 63500 || || || ||||| || |||| | || || || | | | || | | || || Sbjct 156059 GTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGATG 156002 Query 63501 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATG 63560 || || ||| || ||||| | |||||| | || | |||||| ||||| ||||| ||| Sbjct 156001 CCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATG 155942 Query 63561 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620 || || ||| |||| | || ||||| || |||| ||| |||| || |||| Sbjct 155941 CTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGCC 155882 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 || | ||| || ||||| || ||||| | || || || |||||||||||||| Sbjct 155881 GCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTCG 155822 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 || |||| || || ||| || || || | ||||| ||||| | ||| ||||| Sbjct 155821 ATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTGC 155762 Query 63741 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63800 || || || || |||||| || || |||||||| || || |||| ||||| || Sbjct 155761 GGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGAAG 155702 Query 63801 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || ||||||||||| ||||| || |||||||||||| |||| || || Sbjct 155701 CCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 168 bits (186), Expect = 8e-37 Identities = 365/544 (67%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||||||| || || ||||| |||||||| |||||||| | || | ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || || ||||| ||||||||||| || ||||| || |||| ||||| |||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 33472 |||||||| || || || ||||| || || | | || ||| ||| | ||| || Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGC 73208 Query 33473 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | | | ||||| || | ||||| ||||||||||| || || || || | |||||| Sbjct 73209 TTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCG 73268 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 || || || || || || | || || || || || || ||||||| || Sbjct 73269 ATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGC 73328 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||| || || | ||| || || || |||||||| |||||||| || | |||| Sbjct 73329 GAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCC 73388 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || || | ||| || || | || || ||| ||| ||| || ||||| || ||||| Sbjct 73389 TCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCC 73448 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| ||||| || |||| || || || || | ||| || | || | Sbjct 73449 GAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAA 73508 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| || || || || || || | || || |||||||| ||||| || || || || Sbjct 73509 TCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTTCC 73568 Query 33832 GCCT 33835 |||| Sbjct 73569 GCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937341860560