Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq823 188 5e-43 seq712 96.9 2e-15 seq1127 95.1 8e-15 seq1093 95.1 8e-15 >seq823 Length=10996211 Score = 188 bits (208), Expect = 5e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || ||||| ||| | || ||||||||| ||||| ||||| Sbjct 1546990 ATGGCTACCGTAAACGTGAACCGTAACGTGACCGATATGTTCTACCGGTACAAGATGCCT 1547049 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||||||||| |||||||| |||||||| || || || || || || |||||| Sbjct 1547050 CGCATCAACGCCAAGGTAGAGGGTAAAGGAAACGGCATCAAGACGGTGATCGTGAACATG 1547109 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| |||| ||| |||| ||||| || ||||| ||||| || || ||||| ||| Sbjct 1547110 GCGGAAGTGGCTAGAGCGATCGGTCGCCCCGCTACCTATCCGACCAAGTACTTCGGTTGC 1547169 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| ||||||||||| ||||| ||||| Sbjct 1547170 GAACTTGGAGCTCAGACGCAATTTGACCACAA 1547201 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| |||| | | |||||||||||||| | || || Sbjct 1547574 AACGAACGCTTCATTGTGAACGGTGCGCACGATGCCACCAAGCTGCAGGACCTGCTCGAT 1547633 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || |||||| ||| || ||||| | ||| ||||||||||||||||| || || || Sbjct 1547634 GGATTCATTCGCCGGTTCGTCCTGTGCCCGGAGTGCGATAACCCGGAGACGGACCTGATA 1547693 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| || ||||| ||||| ||||| |||||||| | ||| || | Sbjct 1547694 GTTTCGTCGAAGAAGGGTACGATCTCGCAGGGATGCAAGGCGTGCGGCTTCCACGGTCCG 1547753 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 1547754 CTCGAGGTCAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 1547800 >seq712 Length=12093160 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| ||||| |||||| || |||||| || || ||||| || || Sbjct 3459566 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3459625 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 3459626 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 3459685 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 3459686 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3459745 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 3459746 CTCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 3459796 >seq1127 Length=2007 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 819 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 878 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 879 GGCGGTATTTAGCTTTA 895 >seq1093 Length=2207 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 642 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 701 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 702 GGCGGTATTTAGCTTTA 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942031974046