Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq113 159 3e-34 seq490 113 4e-20 seq934 91.5 1e-13 >seq113 Length=5901441 Score = 159 bits (176), Expect = 3e-34 Identities = 387/572 (68%), Gaps = 22/572 (4%) Strand=Plus/Minus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| ||||| ||||| ||||| |||||||||| || | ||| |||| || || | Sbjct 1291924 CACGTCGAACTTGCGCTTGCAGCCGTCGTAGTTCATGTAGCGAATTTTGCCGAATATGTC 1291865 Query 51042 GCGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAAT 51100 ||| || || | | |||| ||||| | || || |||||||| ||||| || || Sbjct 1291864 GCGCTCCTTCCA-GCCCTGGTCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACC 1291806 Query 51101 TGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATG 51160 ||| || ||||| || |||| ||||| ||||||| || | ||||| | | | Sbjct 1291805 CGTTCGGGTCGCGCCCGTCCAGACTGTAGCGATCGTTCAGGTAGATGGCCGTCTCGAGCG 1291746 Query 51161 CCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220 || || | | ||||||| |||| || ||||| |||||||||||||||| | | | Sbjct 1291745 CCTCCTCGGGCGTTCGCGTCCACTCCAGTATCTTCTTCGCCCAGTACATGCGCAGGAAGC 1291686 Query 51221 CGTGCATCTTGCCCT--CGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTG 51278 ||||||||||| ||| |||| | | |||| || |||| |||||||| |||||||| Sbjct 1291685 CGTGCATCTTGGCCTCCCGCACC--ATCTGCAGCTGGGCCGCGTTCCACAGGTCGTCGTG 1291628 Query 51279 AGTTT-GGCAACTTGCCAGCTCTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGT 51337 |||| ||| | | ||||||| | |||| | | | | | | || ||| Sbjct 1291627 CGTTTCGGCCGCCT-CCAGCTCCTGCCGCGTGTA---GCACCACGTACGCTTGTCCTTGC 1291572 Query 51338 GTTGCTCGATC-GTTTCTT--GAGCCCATTGTGGTGCGCCTTCAACACAGTCGTAGCGGT 51394 | || ||| || || |||| | ||||| | || || | | | ||||||| | Sbjct 1291571 GGTGGTCGTTCAGTGTCTTGCGCGCCCACTCGTACGCACCGGCCAGATTGTCGTAGTTGG 1291512 Query 51395 CGTTGTAGAAACAAAAATTGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCGATGTATC 51454 |||||| |||||| || || |||| |||||||||||| || | |||| ||| | | Sbjct 1291511 CGTTGTGGAAACAGAAGTTATCGGACAGTTCGCGGCGCACGATCGCTTCCTCGCAGAACG 1291452 Query 51455 TGTCCACACTATCAGGATG-CGAAGGCTTTAAGCTTAATATCTTCAACACAA---CTCGC 51510 | ||||||| || || || || || ||| | || | || || | ||| Sbjct 1291451 CGGCCACACTGTCGCCGTGTCGCTTGCCGTA--CTT--TTTCACCGCCAGAATCGCACGC 1291396 Query 51511 TGCACGGAAATTTGGCCAAAGTGAAACCATGG 51542 ||||||||||| ||||| ||||||||||| || Sbjct 1291395 TGCACGGAAATGTGGCCGAAGTGAAACCAGGG 1291364 >seq490 Length=13136524 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || ||||||| | ||||||||| | || Sbjct 10199191 ATGCAAATCTTCGTCAAGACCCTGACCGGAAAGACCATCACGCTGGAAGTGGAGCCATCG 10199132 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| |||| || || | ||| || || ||||| || || || || || Sbjct 10199131 GACACTATCGAGAACGTGAAGGCTAAGATTCA-GGATAAGGAAGGCATCCCTCCGGATCA 10199073 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | ||||||| || || || || ||||| Sbjct 10199072 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAA 10199013 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| || || || ||||| || ||| | ||||| | || |||| ||| Sbjct 10199012 TATCCAGAAGGAGTCCACTCTCCATCTGGTGCTCCGTCTGCGAGGTGGA 10198964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| |||| Sbjct 5732713 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5732772 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || || || Sbjct 5732773 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5732832 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| | || || | || ||| || ||| ||||| Sbjct 5732833 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 5732892 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || || || | || || || || | || | |||||||| Sbjct 5732893 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGAAA 5732942 >seq934 Length=8401807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| | || || ||| | || Sbjct 268649 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACGCTTGAGGTCGAGCCCTCG 268590 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || || || Sbjct 268589 GACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 268530 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| |||||| || || ||||| Sbjct 268529 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 268470 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| || || || || ||||| | || | || || || |||| Sbjct 268469 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGACTCCGTGGTGGTAAGTATT 268415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433321314019790