Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq490 174 3e-38 seq302 154 3e-32 seq712 152 9e-32 >seq490 Length=13136524 Score = 174 bits (192), Expect = 3e-38 Identities = 193/255 (76%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 68212 TTGCTATGATG--TGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGA 68269 ||||| | ||| |||||| || | || || || || || | |||| || || ||||| Sbjct 10198941 TTGCTTTAATGAATGATTTAAAAT-CCACCTCGCAGACGGAGCACCAGATGGAGAGTGGA 10198999 Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || ||||| || || || || || || | |||||||| | |||||| |||||||| Sbjct 10199000 CTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAA 10199059 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || || | || || || || || ||||||||||| || |||||||| ||||| ||| Sbjct 10199060 GATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTT 10199119 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||| ||||| | || || ||||||| |||||||| ||||| || ||||||||||| Sbjct 10199120 CTCGATAGTGTCCGATGGCTCCACTTCCAGCGTGATGGTCTTTCCGGTCAGGGTCTTGAC 10199179 Query 68450 GAATATCTGCATTAT 68464 ||| || ||||| || Sbjct 10199180 GAAGATTTGCATGAT 10199194 >seq302 Length=5740867 Score = 154 bits (170), Expect = 3e-32 Identities = 313/465 (67%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| || || || ||||| || |||||||| |||||||| | || | || || Sbjct 882747 CCACATCGCCTCAACGTAGTCTTTGGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACC 882806 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || | ||| | ||||| |||||| | || | ||| ||||| || || Sbjct 882807 CAGCTCGACGCACTCCTGCTGACCGAGCGAAATCTTCGCCACCGAGCGGGTGATCTTGCG 882866 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 ||||| || |||| || || | || ||||||||||| ||||| || ||||| || Sbjct 882867 CGTCACAAAATTCTCACCCCGCCGGGGTGATTCGTGGTTGAACAGGATCCCATTGCAGGC 882926 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| || ||||| || ||||| | || ||||||| | ||||||||||| Sbjct 882927 GAACATATTGTACGCCTCGCGATAGTTGATCACTATCCAGTAGCCGTACATCTTTGCACA 882986 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 ||||||||| || || |||| ||| |||||| | || || || | || || || Sbjct 882987 TGCGTACGGCGAGCGCGGATAGAATGGCGTCTTTTCGTTCTGCGGCGTCTCGACCACCTT 883046 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 || | |||||||| || || || |||||||| || || || | ||| | | Sbjct 883047 TCCGTACAGCTCGGACGTGGACGCCTGGTAGAAGCGGACCGTCTTCTCCTGGCCGACGGT 883106 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 || || || ||||||| || || || || | ||||||| ||||| ||||| || Sbjct 883107 GCGAATGGCATCGAGCAGCCGCAGCGTACCGACCGCATCCACCTCCGCCGTATATTCGCT 883166 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 || ||||| || | || ||| ||||| || ||| |||| || || Sbjct 883167 CAGGTCGAACGAGATCTTGACGTGGCTTTGCGCGGCCAGATTGTA 883211 >seq712 Length=12093160 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| || ||||| Sbjct 3459567 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3459626 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || || Sbjct 3459627 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 3459686 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 3459687 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3459746 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||||||||| |||||||| |||||||| Sbjct 3459747 TCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3459793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607815325520