Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq391 446 3e-120 seq302 311 2e-79 >seq391 Length=2819257 Score = 446 bits (494), Expect = 3e-120 Identities = 1205/1801 (67%), Gaps = 78/1801 (4%) Strand=Plus/Minus Query 243758 ACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGG 243817 ||||||| |||||| | || ||||||||||| ||||| || || | ||| |||||| Sbjct 157495 ACGGCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGG 157436 Query 243818 AGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGG 243877 | |||||| | ||||||||| | | || || ||| ||| | || || | Sbjct 157435 AAGTGCATTGACGTCAGCTTGC----CGT-AG--TTCGGT--TCCGC---CACGTGGATG 157388 Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATG-AGGTC 243936 |||| ||||| ||| |||| ||| | |||| || || ||||| |||| | || Sbjct 157387 TTGAACGACTGCGACTGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTT 157328 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTA--GATGG-GCTTGAGGTGCTCGGGGAACCC 243993 ||| || ||||| | |||| ||||| ||| | || | | || || | Sbjct 157327 -TTCACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGC---ACTTCCTTCGGTATTTG 157272 Query 243994 TTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGTTCC 244052 |||||||||||| | ||| || |||||| | | || || || | ||| | ||||| || Sbjct 157271 TTCGATGTTCTGGATCGAACCGTTGTGGGCCAGGAT-TGTGTTCTTCATATCATCGTCCC 157213 Query 244053 ACAGGCCCAA-GCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCC 244111 |||| || | | || || ||| || |||||| |||||||||||||||||| ||| Sbjct 157212 ACAGACCGTGCGTGGTC-AGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCC 157154 Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171 ||||| ||||| || | ||||| |||| || |||||||| ||| |||||||| Sbjct 157153 GACAGAACGCGCCGGTTGTAGACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCC 157094 Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231 | || || ||||| || |||||||| |||| | |||||| ||| | ||| ||| Sbjct 157093 AAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCG 157034 Query 244232 TGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA-GTCCCACATGCCCGAGAGGTCC-TCGC 244289 || | ||| | ||| || ||| ||| | || || | |||||| ||| Sbjct 157033 TG--TTTGGC-----AATCTTT--TCCTTCAGCGTCGCCCAATTCC-ACAGGTCCGTCG- 156985 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 || | ||||||||| ||||||| | |||||||| || || || ||||| | Sbjct 156984 GTACCTTGTTCCACATGTCGTACTGCAGAATACCCTTGCTCACCGGAGATCCTTCGTACG 156925 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409 || ||| || || || | ||||| || ||||| | || || || | ||||||| Sbjct 156924 TCTCGTACGGTCCCTCCTGAGCGGCCATCTCGCAGCTAGCTTCCAGCGCACCATAGTAGA 156865 Query 244410 TGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC 244467 ||||||| || ||| || || | | | |||| ||||| | | |||| ||| Sbjct 156864 TGGTCTCAAATATCTGCTGATTGAGCTTTTGCGCCT--CCGCACTCTCGTACGGGAAGCC 156807 Query 244468 CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTT 244527 ||||| ||||| | || |||| ||||| |||||||| ||||| || | ||| ||| | Sbjct 156806 CATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCGCAT 156747 Query 244528 GTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 ||| |||||| | ||||| ||||| ||||| ||||| ||||||| | |||||| | ||| Sbjct 156746 GTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAGTT 156687 Query 244588 GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTC 244647 ||| || | || | | || || |||| | || || ||| ||| || || Sbjct 156686 GCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATCATAC--GTACGG----TC 156633 Query 244648 GGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCAC 244707 || | ||| || ||| ||| || || | |||||||||||| || ||||| Sbjct 156632 GG-GCTGG--------ACGAACATGTTCAGCGCAATCGAGGCCAGGTTGCACACCGCCAC 156582 Query 244708 CTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCC 244767 || ||| | ||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 156581 TTCGTCCTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCC 156522 Query 244768 CAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 | || || || ||| ||| ||||| ||||||||||| |||||| | || | || Sbjct 156521 GATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGTACGCC 156462 Query 244828 GGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC 244886 ||||| | ||||| ||| || ||| ||| || ||| ||||| ||| | | Sbjct 156461 CGTCTCCACCTGGGATTCGATGATCGCAAA-CCACAGATCCTGCGCCTTTACCTGGCGGA 156403 Query 244887 -GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 || | |||||| || || | ||||||| ||||||||| |||||| Sbjct 156402 TGAAGCG-GCCCTCCTTTTCATAACCCGTGTACAACTTCTCGAACTCTTCGCCCCACGAA 156344 Query 244946 TCGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGACTCCAC---TCGC-CGCCGTCCT 245000 ||| | | ||||| || | || ||||||||| | ||||||| ||| |||| ||| Sbjct 156343 TCGGCCAATCCGGGACA-GTCGTGCGGGCACATCAAACTCCACGTTTCGTTCGCC-TCC- 156287 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 || | ||||||||| || || || |||||||| || | || | |||||| | | | Sbjct 156286 --ACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGTCCCTTGCGCGCA 156229 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 ||| ||| ||| ||||| ||| |||| || ||||| ||||| || ||| ||||||| | Sbjct 156228 CCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACATCGCCGTGCCACG 156169 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180 |||||| ||||| || | || || |||||||| ||||| ||||| || || || Sbjct 156168 GCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGATCGACGTACCGTG 156109 Query 245181 CGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCT 245240 | |||| | | |||||| | || || | ||||| || ||||| ||||| Sbjct 156108 CCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTCCGTTCGTGCCAG 156049 Query 245241 TGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCT 245300 |||||| | ||||| ||| || | | | | || || | || ||||| || Sbjct 156048 AGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCAGCCCGATGCCACCGGCCGACT 155989 Query 245301 TGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCA 245360 ||||||| || ||||| ||| | ||||| |||||||| |||||||| || Sbjct 155988 TGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCGGACA 155929 Query 245361 TGTTGAGCAGAAAGCAGGAGGACAGCTGGG---GCT-TGGGGCTGCACGAGTTGAACAGA 245416 || | ||||||||||| || |||||||||| ||| | ||| || || ||||| Sbjct 155928 TGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGC-CG---CGAACATG 155873 Query 245417 GTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCG 245476 || || || ||||||||||| || |||||| | |||||||| || | || Sbjct 155872 GTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTCGATCGCTGCC 155813 Query 245477 TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCG 245536 ||||||| ||||||||| | |||| | ||| || | ||||| ||| ||||| Sbjct 155812 TCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTGCGGCCTCTCG 155753 Query 245537 A 245537 | Sbjct 155752 A 155752 >seq302 Length=5740867 Score = 311 bits (344), Expect = 2e-79 Identities = 484/689 (70%), Gaps = 7/689 (1%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| || ||| | ||||| | ||||||| | | |||||| || ||| Sbjct 73556 CTGGACCGTGGAAGAGGTGGACCTCTCGAAGGACATGAAGGACTGGGATTCGCTGAAGCC 73497 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 || ||| ||| || || | ||||||||||| |||||||| ||||| || || Sbjct 73496 GAGCGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCGGACGGTATCGT 73437 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 || ||||| |||| | |||| | ||||||||| ||||| |||||||| Sbjct 73436 GAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTGACGGAGGCTCGCTGCTT 73377 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||| || ||||| || || |||||||||||| ||| ||||| | ||| || | Sbjct 73376 CTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAGATGTACTCGCTGCTGATCGA 73317 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||||||||| | || || ||||| | |||||||| || || || ||| | || Sbjct 73316 CACGTACATTCGCGACCCGAAGGAGCGGGAGTACCTGTTCAACGCGATCGAAACGCTCCC 73257 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 ||| | ||||||||||| ||||||||||| ||||||||| ||| | || | || Sbjct 73256 GTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCGAGCAAGCAGGCCAACTT 73197 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 |||||| | |||| || || | ||||||||||||||||||||| || |||||| Sbjct 73196 TGGCGAGCGAGTGGTGGCGTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGAAGCTTCGC 73137 Query 42755 CTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAA 42812 ||||||||||||| ||| || ||| | |||||| || || || ||||||||||| Sbjct 73136 GGCCATCTTCTGGCTGAAGAAGC--GTGGCCTGATGCCGGGTCTGACGTTCTCGAACGAG 73079 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 | ||| | |||||||| ||||| | || ||||||||||| ||||| || | Sbjct 73078 TTGATCTCGCGTGACGAGGGACTGCACTGTGATTTTGCCTGCCTGATGTTC---CGCTAT 73022 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || ||| ||||| |||||||||| || || |||||| || || || | ||| Sbjct 73021 CTGGTGCAGAAGCCGACGAAGGAGCGCGTGACGGAAATCATCCGCGATGCGGTCGCAATC 72962 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| |||||||||| ||| || |||| || || || |||| |||||| ||| || Sbjct 72961 GAGCAGGAGTTCCTGACGAAGGCGCTCCCGGTTGATATGCTCGGTATGAACTGCGATCTG 72902 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGA 43021 |||| |||||||| ||| ||| ||||| Sbjct 72901 ATGTCGCAGTACATCGAGTTCGTGGCCGA 72873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324255832160