Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq391 132 5e-26 seq934 109 5e-19 seq712 105 7e-18 seq490 93.3 4e-14 >seq391 Length=2819257 Score = 132 bits (146), Expect = 5e-26 Identities = 469/725 (65%), Gaps = 12/725 (2%) Strand=Plus/Minus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 |||||| || || || ||| |||| |||| || || || |||||||| |||||||| Sbjct 157523 TTTGTCGACCGTGAACTGGATCGCATTTACGGCGGGCTTGGTGCGCAAATAGTACATGCC 157464 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 || |||| || ||||| | ||| | ||||| || | || | | || Sbjct 157463 AGTCTTCAGGCCCATCTTCCACGCGTGGAAGTGCATTGACGTCAGCTTGCCGTAGTTCGG 157404 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | ||| | | ||| |||||||| |||||||||||| || || || ||||| || Sbjct 157403 TTCCGCCACGTGGATGTTGAACGACTGCGACTGATCGATGAACGCACCCCGGTCGGCTGC 157344 Query 153851 CATGTCAAT-CAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||| | || || ||||| || | || ||||| || |||||||| | | | | Sbjct 157343 CATCTGGATGCACGTTTTCACCGAA-ATCTCCCAAACCGTTTTGTACAGATCGCGCACTT 157285 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969 | | ||||| | || || ||||| | || | || | || | || || Sbjct 157284 CCTTCGGTATTTGTTCGATGTTCTGGATCGAACCGTTGTGGGCCAGGATTGTGTTCTTCA 157225 Query 153970 TGTGGTCGTCGTACAAAT--TTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTAC 154027 | | ||||| ||| | | || | || | || | | || ||| ||||| | || Sbjct 157224 TATCATCGTCCCACAGACCGTGCGTGGTCAGA--TCCTTGATCAGGTGGTGGTTCACCAC 157167 Query 154028 TTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGA 154087 ||||| ||||| | || ||||| || || | ||| ||| ||||||||||||| Sbjct 157166 CTGAAACTCGCCCGACAGAACGCGCCGGTTGTAGACGTTGGACGTGTACGGCTCGAACGA 157107 Query 154088 TTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGA 154147 ||||||||||| || ||||| || || | || || ||||| ||| | || || || Sbjct 157106 CTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGA 157047 Query 154148 GTTTCGCAAACCGTGTTTTGCAATGCGCAATT--TTAAATCT-GCCCAATTCCACAAGTT 154204 ||| |||| ||||||||| ||||| | || || | | ||||||||||||| || Sbjct 157046 GTTGCGCACACCGTGTTTGGCAAT---CTTTTCCTTCAGCGTCGCCCAATTCCACAGGTC 156990 Query 154205 GGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACT 154264 || ||| | ||||||||||||||| |||| || |||| ||| ||||| | Sbjct 156989 CGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATACCCTTGCTCACCGGAGATCCTTC 156930 Query 154265 ATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATA 154324 || | |||||| || | | | |||| ||||| || ||||| | ||| |||| Sbjct 156929 GTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTCGCAGCTAGCTTCCAGCGCACCATA 156870 Query 154325 GTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAA 154384 ||| | ||| || || || | || | | ||| || | |||| |||||||| || Sbjct 156869 GTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTGCGCCTCCGCACTCTCGTACGGGAA 156810 Query 154385 TCCCA 154389 |||| Sbjct 156809 GCCCA 156805 Score = 118 bits (130), Expect = 1e-21 Identities = 339/519 (65%), Gaps = 7/519 (1%) Strand=Plus/Minus Query 154625 GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT 154684 ||| | |||||| || | ||| | ||| ||| |||||||| | ||||| || || Sbjct 156566 GTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGTTGGTT 156507 Query 154685 CGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGT 154744 |||| ||||| ||||| ||||||| |||||||| |||||| ||||| |||| Sbjct 156506 GCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACCTGGGA 156447 Query 154745 TTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCG 154802 ||| || || | | || || | || |||||| || || | | || || || Sbjct 156446 TTCGATGATCG--CAAACCACAGATCCTGCGCCTTTACCTGGCGGATGAAGCGGCCCTCC 156389 Query 154803 CTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGA 154862 | ||||| ||||| || || |||||| | || || | ||| |||||| Sbjct 156388 TTTTCATAACCCGTGTACAACTTCTCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGA 156329 Query 154863 CAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAA 154922 ||| || || |||||||| |||| ||||||| | ||||| | ||| |||| | Sbjct 156328 CAGTCGTGCGGGCACATCAAACTCCACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGA 156269 Query 154923 TCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTT 154982 ||||| | ||| | ||||| |||| || | || || || ||| ||||| Sbjct 156268 TCCGGTATCCAGAGCGCGTAAAACATGTCCCTTGCGCGCACCTCCTCCTTGCCGGTGTTT 156209 Query 154983 CGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATC 155042 ||| | || ||||| ||| | | ||| ||||||||||||| | || | ||| | | Sbjct 156208 TTCTTCAGATCTAAAAACTCAAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAAC 156149 Query 155043 GCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGC 155099 || ||| || || || || ||||| |||| || | ||| |||||||||||| Sbjct 156148 GCACCTGGCCGCTTATTGCCGCCCTGATCGACGTACCGTGCCGTATTGTTGTACACGCGC 156089 Query 155100 AACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCA 155138 | || ||| ||| ||| | | | ||||| |||||| Sbjct 156088 AGCATCGGTACCAACCCGTTCGAAATTCCGTTCGTGCCA 156050 >seq934 Length=8401807 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | |||| |||||||| || || |||||||| || | Sbjct 268422 ACCACCACGGAGTCGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 268481 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||||||| | || || |||||||| || || || Sbjct 268482 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGG 268541 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| || | || || || || || Sbjct 268542 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGAC 268601 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| |||||||| ||||| Sbjct 268602 CTCAAGCGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 268649 >seq712 Length=12093160 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||||| ||||| || || || |||||||| || | Sbjct 3459566 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3459625 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| |||||||| || || || Sbjct 3459626 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 3459685 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| ||| | ||||| || || || Sbjct 3459686 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3459745 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||| || || | ||||| ||||| || ||||| || Sbjct 3459746 CTCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 3459796 >seq490 Length=13136524 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || || |||| || |||||||||||| Sbjct 5731107 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTGCCG 5731048 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || ||||| || || || || || || ||| Sbjct 5731047 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 5730988 Query 64367 ACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || | | |||| || || || | ||| | ||||||||| ||||| || Sbjct 5730987 ACGTTCTCAATCGTGTCCGACGGC-TCGACCTCCAGAGTGATGGTCTTGCCAGTCAACGT 5730929 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 5730928 CTTCACGAAGATCTGCAT 5730911 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || || |||| || |||||||||||| Sbjct 5732681 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTGCCG 5732622 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || ||||| || || || || || || ||| Sbjct 5732621 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 5732562 Query 64367 ACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || | | |||| || || || | ||| | ||||||||| |||| || Sbjct 5732561 ACGTTCTCAATCGTGTCCGACGGC-TCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGT 5732503 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 5732502 CTTCACGAAGATCTGCAT 5732485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || || |||| || |||||||||||| Sbjct 5732453 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTGCCG 5732394 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || ||||| || || || || || || ||| Sbjct 5732393 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 5732334 Query 64367 ACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || | | |||| || || || | ||| | ||||||||| |||| || Sbjct 5732333 ACGTTCTCAATCGTGTCCGACGGC-TCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGT 5732275 Query 64426 TTTTACGAAAATTTG 64440 || ||||| || || Sbjct 5732274 CTTCACGAAGATCTG 5732260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636893121040