Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq302 111 2e-19 seq368 102 1e-16 >seq302 Length=5740867 Score = 111 bits (122), Expect = 2e-19 Identities = 250/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 10486 CCACAAAATGAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGT-TG 10543 || || || || ||||||| |||||||| || || || | | | | ||||| | | Sbjct 883031 CCGCAGAACGAAAAGACGCCATTCTATCCGCGCTCGCCGTACG-CATGTGCAAAGATGTA 882973 Query 10544 CGGCACATTGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTA 10603 |||| | ||| | |||| || |||||||| | || | | || | ||| || | Sbjct 882972 CGGCT-ACTGGATAGTGATCAACTATCGCGAGGCGTACAATATGTTCGCCTGCAATGGGA 882914 Query 10604 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CC 10662 | || ||||||||||| |||||||| || || | |||| ||||| ||||||| || Sbjct 882913 TCCTGTTCAACCACGAATCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCC 882854 Query 10663 GAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAA 10721 | | ||| | || | || | ||| || ||||| | | || |||| || ||| | Sbjct 882853 GCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGA 882796 Query 10722 CGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCA 10781 | || | |||||||| |||||||| ||||| ||||| || |||||| | | | || Sbjct 882795 TTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCA 882736 Query 10782 ACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 10841 || || || |||| || | |||| |||||||||| || || ||||| || | ||||| Sbjct 882735 GCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTGAGTT 882676 Query 10842 CGTTGAG 10848 || ||| Sbjct 882675 TGTCGAG 882669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 335/518 (65%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||||||||| ||||| | || |||||||| |||||| Sbjct 73041 GCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAGAACGTCAGACCC 73100 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| || || || ||| ||||||||| Sbjct 73101 GGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCACTGAAGAAGATG 73160 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || |||||||| | | |||||| ||||| | ||| | | | Sbjct 73161 CCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGCTTGCTCGAGATC 73220 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 || |||| |||||| | ||||| |||| | || |||| || | |||||| | || Sbjct 73221 CAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCGATCGCGTTGAAC 73280 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819 || | || | || || || |||||| | || || || || || | ||| Sbjct 73281 AGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGCGAGTACATCTCG 73340 Query 127820 CCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 | ||| || ||| || ||| |||| || ||||||| |||| || || | | || Sbjct 73341 CTGTGCAC--GTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCCTCCGTCACCT 73398 Query 127878 GTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 | ||||| | ||| || | | | |||||| || || || || || | ||| Sbjct 73399 GCACCTCCT-GGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCCGAGGCGGCA 73457 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCG 127996 || || ||||| | | | ||||| | | || || ||||| | | |||||| Sbjct 73458 AAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAATCCCAGTCC 73517 Query 127997 TCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | | ||||| ||||| || ||||| ||| | ||||| Sbjct 73518 TTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCA 73555 >seq368 Length=3665626 Score = 102 bits (112), Expect = 1e-16 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 175959 |||||||||||||||| || ||| ||| |||||||| | | ||||| || || || Sbjct 2226853 GTGAAGATGTACCTCGGACTAG-CGCTATCCTTGCCACCGGTCAACCGCGTACCGAACTG 2226911 Query 175960 ACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGAC 176019 ||| | || || |||||||| ||||| || | |||| | ||||| ||||| Sbjct 2226912 ACCGCCCGGAAACAGTAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTGAC 2226971 Query 176020 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 ||||| || | || || ||| ||||| ||||| || ||| | |||||||| | Sbjct 2226972 GATCGT---CGAGCAAAGCGATTGTTCGCCGTGGTGGTACGCGGACATTTCCGCCACCGA 2227028 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 |||||| |||||||||||||| ||| |||| || | |||||||| ||| Sbjct 2227029 ACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCACGTGAACAG 2227088 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| | ||| ||||| |||||||| Sbjct 2227089 CACCTTCCGCTGGCCCGGCTTCAGGCCGTC 2227118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497491248560