Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq391 141 7e-29 seq934 98.7 8e-16 seq712 95.1 9e-15 seq490 91.5 1e-13 >seq391 Length=2819257 Score = 141 bits (156), Expect = 7e-29 Identities = 216/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 8995 TTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACC 9054 || || || || || || || ||||| | ||||| | ||||| ||| || | || | Sbjct 1161812 TTGGTGCCAGTAGATCCGAATCCTCCGGCGCCGCGCTCCGTGTCCGTCAGCGACGGAAGC 1161871 Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||| ||| ||||| || | ||| || || || || || || | || ||||| Sbjct 1161872 TCTTCCAAGTCCGGATAGGCTATCTTTTCGCAGATGAACTGCGCGATACGATCACCCTTC 1161931 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 ||||| ||||||| | ||||| || ||||||||||| || || || || || | ||| Sbjct 1161932 TTCACCTCAAAGTCCGCCTCGGAGTGGTTGAACAGCACGACGCCGACATTTCCACGGTAG 1161991 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 ||||| |||| || || |||||||| |||||||||| ||| ||||| || || || || Sbjct 1161992 TCCTCGTCGACGACGCCGGCACCCACATCGATGAAGTTCTTCACCGCCAGCCCGGATCGT 1162051 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGC 9294 || || | || ||||| || || |||| | |||||| | | |||||||| || ||| Sbjct 1162052 GGTGCCACACGTCCGTAACAGCCTTCCGGCACCTGCACCTGGATATCGGTCATCACAAGC 1162111 Query 9295 CCCTTGCC 9302 ||||| Sbjct 1162112 TGTTTGCC 1162119 >seq934 Length=8401807 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || || || ||||| || || ||| | || Sbjct 268432 AGTCGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGG 268491 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| ||||||| ||| | |||||| Sbjct 268492 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCC 268551 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 268552 TTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGCGTG 268611 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || |||||||||||| Sbjct 268612 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATC 268650 >seq712 Length=12093160 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || || || | || Sbjct 3459576 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGG 3459635 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| ||||||| || | |||||| Sbjct 3459636 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCC 3459695 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 3459696 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 3459755 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||| | ||||| || || ||||||||| || Sbjct 3459756 ATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 3459797 >seq490 Length=13136524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAG 48597 ||| ||| | | ||||| ||||| ||| | ||| | || | | || || |||||||| | Sbjct 10201425 GCCACCCTTCAACCGCAGCACCAGATGCATCGTCGATC-CGTGCTGGATGTTGTAATCGG 10201483 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | |||| | ||||||| |||||| ||||| || || | |||||||| || | | Sbjct 10201484 AGATAATTCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATGATGCGCTGTTGGTCTGGTG 10201543 Query 48658 GAACGCCCTCC---TTGTCGCTAAT-CTTTTGTTTTACAGAACCCACAGACTCTGACGCC 48713 || ||||| | ||| | | |||||| | | |||||| | || || || Sbjct 10201544 CAATACCCTCGCGTTCCTCGATTTTACTTTTGATATCTAGAACC----GTTTCCGAGGCG 10201599 Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || || | ||| ||||||||||| || | |||||||||||||||||||| Sbjct 10201600 GCGACGTCGAGCGTGATCGTTTTTCCGGTTAGCGTTTTTACAAAAATCTGCAT 10201652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || ||| | || |||| |||| |||||| ||||| || Sbjct 5731102 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 5731043 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| ||||| | || | ||||||||||| ||||| || || Sbjct 5731042 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 5730983 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| || || || || || ||||| || || || Sbjct 5730982 CTCAATCGTGTCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAACGTCTTCAC 5730923 Query 48755 AAAAATCTGCATC 48767 || ||||||||| Sbjct 5730922 GAAGATCTGCATC 5730910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931722370918