Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq391 351 2e-91 seq302 232 1e-55 seq1 113 8e-20 >seq391 Length=2819257 Score = 351 bits (388), Expect = 2e-91 Identities = 893/1333 (67%), Gaps = 68/1333 (5%) Strand=Plus/Minus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||||| |||||| |||| || | ||| || || || || || || | || | ||| | Sbjct 157190 CTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAGAC 157131 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || ||||| ||||||| ||||||||| |||| ||| ||||| || || || Sbjct 157130 GTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGT 157071 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAG 213073 ||||| || || | ||| || ||| | ||| ||||| | | | || | || Sbjct 157070 CGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAG 157011 Query 213074 CTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGT--CCTTCACGTTCCACATGTCAAA 213130 | ||||| | ||| ||||||| ||| |||| |||||||||||| | Sbjct 157010 CGTCGCCCAATTCCA---------CAGGTCCGTCGGTACCTT---GTTCCACATGTCGTA 156963 Query 213131 CTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTT 213190 ||||| || || |||||||| || || | ||| | ||| || || | || Sbjct 156962 CTGCAGAATACCCTTGCTCACCGGAGATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGC 156903 Query 213191 GGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT 213250 ||||| ||||||| || | ||| ||| | ||||||||||| |||||||||| | || Sbjct 156902 GGCCATCTCGCAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATT 156843 Query 213251 GAGCTTCTTGGCCTCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATC 213304 |||||| | ||||| | | ||| |||| ||||| ||| ||| |||| Sbjct 156842 GAGCTTTTGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATG------AACGCATC 156789 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCA 213361 ||||| |||||||| ||||| ||||| || | ||| | || ||| || ||| | Sbjct 156788 AGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCT-- 156731 Query 213362 CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTT 213421 ||| || ||||| ||||| |||||| |||||||| | |||||| || | | ||| Sbjct 156730 -TCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATTTT 156672 Query 213422 GGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGG 213481 || || | ||| | | || || | ||||| | || ||| || ||| Sbjct 156671 GGCTACCTCTTTCAGCTTCGCGAAATC--ATACGTA-CGGTCGGGCTGGACGAACATGTT 156615 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC---CTGAGAGTCTGTGTACTCCAT 213538 ||| || || |||||||||||| || ||||| || || || | |||||||| Sbjct 156614 CAGCGCAATCGAGGCCAGGTTGCACACCGCCACTTCGTCCTTCGAC---GAGTACTCCAC 156558 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 ||||||||||| ||||| ||| ||||||||| | ||| || ||||| | ||||| Sbjct 156557 AATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGTTGGTT-GCTTTTGC 156499 Query 213599 GTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTA 213657 | | ||| | |||||||| |||||||| || || ||||| | |||||| | | | Sbjct 156498 GATTGCACGCGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGA 156439 Query 213658 TCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCT-- 213714 || ||| || | |||| ||||| ||| || ||| ||| || | | ||| Sbjct 156438 TCGCAAACCACAGAT-CCTGCGCCTTTACCTGGCGGATGA-AGC---GGCCCT--CCTTT 156386 Query 213715 -CGTA--CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGA 213770 | || | || ||| | || | ||| || | |||||| || | | ||| ||| ||| Sbjct 156385 TCATAACCCGT--GTACAACTTCTCGAACTCTTCGCCCCACGAATCGG-CCAATCCGGGA 156329 Query 213771 CAGGA-TGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACA 213828 ||| |||||| ||||| | ||||| || | || ||| || | ||||||||||| Sbjct 156328 CAGTCGTGCGGG-CACATCAAACTCCACGTTTCGTTCGCCTCC-ACGCGCTGCATGAACA 156271 Query 213829 GGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGT 213888 | ||||| | ||| |||||| |||| |||||| | | | ||| ||| || | || Sbjct 156270 GATCCGGTATCCAGAGCGCGTAAAACATGTCCCTTGCGCGCACCTCCTCCTTGCCGGTGT 156211 Query 213889 TTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAA 213948 |||| |||||||| ||| ||||| | || ||||||||||||||| ||||||||||| Sbjct 156210 TTTTCTTCAGATCTAAAAACTCAAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCAA 156151 Query 213949 AGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGC 214005 | || || |||| | ||||||||||| || || || ||| ||||| | | || Sbjct 156150 ACGCACCTGGCCGCTTATTGCCGCCCTGATCGACGTACCGTGCCGTATTGTTGTACACGC 156091 Query 214006 GCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGG 214065 |||| | ||||||| |||||| || |||||| || || | || |||| || | Sbjct 156090 GCAGCATCGGTACCAACCCGTTCGAAATTCCGTTCGTGCCAGAGATGTACGTTCCCTTCG 156031 Query 214066 CCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGC 214125 ||| | | | || | ||||| ||||||||||| |||||||||||| ||||| Sbjct 156030 CCCGGATGCAGTGCACGTTCAGCCCGATGCCACCGGCCGACTTGGAGATCAGTGCGCACT 155971 Query 214126 GCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGC 214185 || ||| || || |||||| | |||||||| || | | | |||||| ||||| Sbjct 155970 GCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAG 155911 Query 214186 TCGAGAGCTGGGG 214198 ||| |||||||| Sbjct 155910 ACGACAGCTGGGG 155898 >seq302 Length=5740867 Score = 232 bits (256), Expect = 1e-55 Identities = 370/531 (70%), Gaps = 0/531 (0%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||||||||| || | ||||| || ||||| || ||| | | |||| ||||| Sbjct 73034 CAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAGAACGT 73093 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||||| ||||| | || | || || |||||||| || |||||||| ||| ||| Sbjct 73094 CAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCACTGAA 73153 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 |||||||||||| || || |||||||| | | ||| || || || | |||| Sbjct 73154 GAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGCTTGCT 73213 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||| ||||||||||| ||||||||||| | ||| || | ||| || || || Sbjct 73214 CGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCGATCGC 73273 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||| || | || | ||| | ||| || || || || |||| | ||| Sbjct 73274 GTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGCGAGTA 73333 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| |||||| ||||| || || ||||| |||||||||||| | ||||| Sbjct 73334 CATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCCTCCGT 73393 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||||||| || | ||| | ||||| ||||||||| || || || || || || || Sbjct 73394 CACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCCGAGGC 73453 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 ||||||||||| || || || | ||| || |||||| | | | || | || ||| Sbjct 73454 GGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAATCCCA 73513 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| | ||| || |||||||| |||||||| ||||||||||| || Sbjct 73514 GTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGC 73564 >seq1 Length=22947322 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || |||||| || || || ||||| ||||| Sbjct 6948193 CTTCAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCCGCCGGCA 6948252 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| || | ||| || || ||||||||| ||||| Sbjct 6948253 CTTGGAGGCGGCCACCCGGTTCCGTAGCCGCTTCCGCTCGAGCTTGATGCGCTCCTGCGA 6948312 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 6948313 CTCCATGTCGATCGG 6948327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518058493440