Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq848 150 2e-30 seq302 134 2e-25 seq391 125 9e-23 seq402 123 3e-22 seq601 122 1e-21 seq1 107 2e-17 seq379 91.5 2e-12 seq799 87.8 2e-11 >seq848 Length=3946 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||||||||||||||| ||||| | || Sbjct 3633 GCTTGGCCAGCTCACCGGGCAGCAGCAGACGCACGGCGGTCTGGATTTCGCGGGACGTGA 3574 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||||||| ||||||| ||||||| |||| | Sbjct 3573 TCGTCGAGCGCTTGTTGTAGTGCGCCAGACGGGACGCCTCGGCCGCGATGCGCTCGAAGA 3514 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||| | ||| |||||||| ||| |||| Sbjct 3513 TGTCGTTCACGAAGCTGTTCATGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGT 3454 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| ||||||||||||||| Sbjct 3453 GCACTTGCTTCAGCACCTTGTAGATG 3428 >seq302 Length=5740867 Score = 134 bits (148), Expect = 2e-25 Identities = 202/287 (70%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| ||||| || | || || ||||| ||||| |||||| Sbjct 73059 CCCTCGTCACGCGAGATCAACTCGTTCGAGAACGTCAGACCCGGCATCAGGCCACGCTTC 73118 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| |||||||| ||| || || ||| ||||||||||||||||| || || Sbjct 73119 TTCAGCCAGAAGATGGCCGCGAAGCTTCCACTGAAGAAGATGCCCTCGACGGCAGCGAAC 73178 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | | |||||| ||||| | | ||| |||| | |||||| |||| |||| Sbjct 73179 GCCACCACTCGCTCGCCAAAGTT------GGCCTGCTTGCTCGAGATCCAGTTCAGCGCC 73232 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| |||| |||| | ||| ||||| ||| || |||| ||| Sbjct 73233 CAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCGATCGCGTTGAACAGGTACTCCCGC 73292 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||||| | || ||||||||||| ||||| || |||| Sbjct 73293 TCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGCGAGTACATCTC 73339 Score = 104 bits (114), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| | |||||| || || ||||| || ||||| ||| | |||| | ||| || || Sbjct 73343 GTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCCTCCGTCACCTGCAC 73402 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| |||| || | |||| |||||| |||||| ||||| |||||| || || Sbjct 73403 CTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCCGAGGCGGCAAAGAA 73462 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 ||||| |||||| ||| ||||| |||||| ||| | | ||||| |||||| Sbjct 73463 GGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCT-TCAGCGAATCCCAGTCCTTCA 73521 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| |||||||||||| || ||||||||| || || || |||| Sbjct 73522 TGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTTCCGCCT 73572 >seq391 Length=2819257 Score = 125 bits (138), Expect = 9e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| |||||||| || ||||| | ||| | ||||| ||||| || || | ||||| Sbjct 156128 GCCCTGATCGACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTT 156069 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || ||||| ||||| | | ||| | || || || | |||| || | Sbjct 156068 CGAAATTCCGTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCAG 156009 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| ||||||||||||||||| || |||||||| || ||||||||||||||||| Sbjct 156008 CCCGATGCCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCC 155949 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 |||||| |||| | |||| || |||||||| ||||| Sbjct 155948 CTCGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGA 155907 >seq402 Length=2654352 Score = 123 bits (136), Expect = 3e-22 Identities = 239/344 (69%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 732954 CGCATCGTCAAGCGCGACAAGTCGACCATCCTGCGCACGAACGAGCCCGCCACGGTGCAC 733013 ||| || |||||| ||| |||||| ||||||||| ||| ||| | || | Sbjct 276613 CGCTTCACCAAGCGTGACGGGTCGACGTTCCTGCGCAACTCCGAAACCGGTATCGTCGAT 276554 Query 733014 CGCGTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGAT-CGTGACGCGCGC 733072 | ||| || |||||| |||| |||| ||| ||| | |||||| |||| ||| | Sbjct 276553 CAGGTGATGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATTCGTGT-GCGATC 276495 Query 733073 CATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACC-G 733131 ||||| || || | || ||||| | ||||||||||||| || ||||| ||| | Sbjct 276494 GGTGCGCATTCCGCAGATCGGGGACAAGTTTGCGTCGCGCCACGGACAGAAGGGTACCTG 276435 Query 733132 TGGGCAGC-GTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCC 733190 |||| | || | | || ||||||||||| || || | | ||| |||||| Sbjct 276434 TGGGATACAGTAC-CGGCAG-GAGGACATGCC---GTTTACGTGTGAGGGCATCACGCCG 276380 Query 733191 GACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAG 733250 |||||| | ||||||||||||||||| |||||||| |||||||| ||| | || ||||| Sbjct 276379 GACATCATCATCAACCCGCACGCCATTCCGTCGCGTATGACCATCGGCCATTTGATCGAG 276320 Query 733251 GCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGA 733294 ||| ||| ||| ||| || | ||||| | |||||||| Sbjct 276319 TGTATCCAGGGGAAGCTGGGCTCGAACAAGGGCGAGATCGGCGA 276276 >seq601 Length=12921292 Score = 122 bits (134), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGC-CGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 |||||||||| || ||||| | || ||||||| || || | || || || | Sbjct 1390091 AGAAGCGCACGGATGACAT-TAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAAGGC 1390149 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||||| || ||| |||||||||| || ||||| || ||||| ||| |||||| || | Sbjct 1390150 ACCCTGTTCGAGCTGATCCTCGCAGCGAACTATCTGGACATTAAGGGTCTGCTGGACGTG 1390209 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | || || ||||||||||||||||| | || || |||||||||||||| Sbjct 1390210 ACTTGCAAGACGGTCGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATCCGCAAGACG 1390269 Query 1592285 TTTAACATCAAGTACG 1592300 || ||||||||| ||| Sbjct 1390270 TTCAACATCAAGAACG 1390285 >seq1 Length=22947322 Score = 107 bits (118), Expect = 2e-17 Identities = 208/301 (69%), Gaps = 12/301 (4%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 |||||| || || ||| || || || | |||| ||||||||||||| | || ||||| Sbjct 4104134 GGGTCCTCCGGGAGTGGGTAAAACGACCACCATCCTGTGTCTGGCGCGTATTCTGCTTGG 4104193 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 | | || |||||||||||||| || ||||| ||| | ||||| || |||| | Sbjct 4104194 ACCGAACTTTCGG-GAGGCCGTGCTCGAGCTGAACGCATCGAATGAGCGTGGTATCGATG 4104252 Query 1574014 TCGTGCG---CAAGATCATCAAGCACCACGCCTCCAAGAGGA--TCGACCTGCCGCCCGG 1574068 | ||||| |||||||| | | ||| ||| || | || ||||| | ||| Sbjct 4104253 TGGTGCGTAGCAAGATCAAAATGTTT---GCC--CAACAGAAAGTCACGCTGCCCCGCGG 4104307 Query 1574069 ACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGC 1574128 || || ||| | | || ||||||||||| ||| || | ||| | || |||||||| Sbjct 4104308 GCGTCATAAGATCGTAATTCTCGACGAGGCGGACAGCATGACGGAAGGTGCGCAGCAGGC 4104367 Query 1574129 CCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACAC 1574188 || || || ||||||| ||| ||||||||| || ||||| |||| || ||||| Sbjct 4104368 ACTACGCCGTACGATGGAAATCTACAGCAACACGACCCGATTTGCGTTGGCCTGTAACAC 4104427 Query 1574189 G 1574189 | Sbjct 4104428 G 4104428 >seq379 Length=19898295 Score = 91.5 bits (100), Expect = 2e-12 Identities = 332/508 (65%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||| ||| | | ||||||| ||||||||||| ||| || ||||| | | Sbjct 11685876 CGATCTTCGAGTCTTCTTCGCTGGAAGACATCTTGCCGC---CGGCCAGTCCCGGAATCA 11685820 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGT-GGTCGCGCGCA 1852162 |||||| | ||| |||| |||||| ||||| | |||||| | || || || Sbjct 11685819 TCGGGTTCATCAGATGGATGCGCTTGGCGTAGCCCAACTGCGGCAGATACTTCTCG-GCG 11685761 Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| || ||||| ||||| || ||||| ||||| ||||| || | || | || | Sbjct 11685760 AAGGTGAAAATCTTACGCTGATCTACACCGCCGAACTGTGCGTCCACCTTCAGATACTCC 11685701 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGG--GTTGCGGTCCA 1852280 ||||| || ||||||| |||||| || | | || ||||| ||| | || Sbjct 11685700 TCGTCCAGCGCCTGCAGCCCCGGGTACAGGATGCCCGACATCAGCGGATGTTCC--ACCT 11685643 Query 1852281 TCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGCCGCGA 1852337 ||| || |||| ||| | |||| || ||| ||||| |||| ||| || || | Sbjct 11685642 GCTTCACAACCTCGGCGCCCGCCTTCTTGGCGTCGTGC---TGCGTCACCACCGACGATA 11685586 Query 1852338 GTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAAA 1852395 ||||| | ||| || | ||| | || || || ||| || || ||||||| ||| || Sbjct 11685585 ACCGGTACACGTCCAGGGTGTA--CTCCTTCGACAGCTGATAGTCCGTGCCGCACACGAA 11685528 Query 1852396 CTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455 | || | |||| || ||||||| | ||||| |||||||| | |||||| Sbjct 11685527 CCGCAGCTTGTCCAGTGGGACGCCGAGCGACGTAAGCATCGCCTTGATAACCGCCTCGTA 11685468 Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515 | | || | | | || |||||| | ||| |||||| || | ||| || Sbjct 11685467 GTACTTGGTGCGTTCCTTCAGTAGCGACCACGGTGCCTTCATGTTGTCCAGATAGGCATG 11685408 Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGA 1852543 || ||| || || |||||| | ||| || Sbjct 11685407 CAGGTCTGCGAATAGGATCGTTACCTGA 11685380 >seq799 Length=4356 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | ||| || ||||| || ||||| ||||| | || Sbjct 2809 GCTTGGCCAACTCACCAGGCAACAGCAGACGGACGGCCGTTTGGATTTCGCGGGACGTGA 2750 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| ||||||||| ||| || |||| ||||||| |||| | Sbjct 2749 TCGTCGAACGCTTGTTGTAGTGCGCCAAGCGGGATGCTTCGGCAGCGATGCGCTCGAAAA 2690 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| |||| || || || || || | Sbjct 2689 TGTCGTTCACGAAGCTGTTCATGATGCTCATCGCCTTGGAAGAAATTCCGGTATCCGGAT 2630 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || | ||||||||||||| Sbjct 2629 GGACTTGTTTCAACACCTTGTAGATG 2604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107035306111322