Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq391 540 1e-148 seq490 127 2e-24 seq712 123 2e-23 seq934 118 1e-21 >seq391 Length=2819257 Score = 540 bits (598), Expect = 1e-148 Identities = 1198/1765 (68%), Gaps = 58/1765 (3%) Strand=Plus/Minus Query 147942 GCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCG 148001 ||||| | ||||||| |||||||||||| ||||| |||||||| ||| |||| | | Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 148002 TGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058 |||| |||| || || || || |||| | || ||| | || |||||||| Sbjct 157432 TGCATTGACGTCA---GCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGC 157376 Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTT-ATCTTCAT 148117 ||| || |||||||| || ||||| || ||||| | ||| || ||| | | || Sbjct 157375 GACTGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCA-CGTTTTCACCGAAAT 157317 Query 148118 CTCCCAGGCCGTCTTGTACAGC-CGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCA 148176 |||||| |||| |||||||| ||| | |||| | | |||||| ||| | Sbjct 157316 CTCCCAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGT-TCGATGTTCTGGA 157258 Query 148177 CCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGA 148236 ||| ||| ||| || | || || ||| || || | || | || | Sbjct 157257 TCGAACCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGG 157198 Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 |||| || | |||||| | || |||||||||||||||||||| | || |||||||| Sbjct 157197 TCAGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGT 157138 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || |||||| ||| |||| || ||||||||||||||||||||||| || || |||| Sbjct 157137 TGTAGACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCG 157078 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||| ||||| ||| | |||||| |||||||||| |||| | || || || Sbjct 157077 AAGCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTT 157018 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCA 148476 |||||| | |||||| | ||| || || |||| | |||||||||||||||||||| Sbjct 157017 CCTTCAGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCA 156958 Query 148477 GAATGCCGCGGCT-AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCC 148535 |||| || ||| | ||| | | || ||||||| ||||||||| | | || ||| Sbjct 156957 GAATACCCTTGCTCACCGGAGAT-CCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCC 156899 Query 148536 AGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC 148595 | |||||||| || || ||||| || ||||| || ||||| || ||| |||||| Sbjct 156898 ATCTCGCAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGC 156839 Query 148596 ---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGG 148652 ||||| ||| | || |||||||| | | || | | ||||| || || | Sbjct 156838 TTTTGCGCCTCCG---CACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATA 156782 Query 148653 CCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC-GCGCTCTCG-- 148709 ||||| ||||| | || || || ||||| ||||| || |||| |||| || Sbjct 156781 CCCTGGACGCCGATACCGATCGGACGGTGGCGCATGTTCGA---GCGCTTCGCTTCCGGC 156725 Query 148710 AGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG-TAA 148767 | ||| ||| ||| |||||| |||||| ||||| |||||| ||| | || | || Sbjct 156724 ACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAG-TTGCGCGTCACGATTTTGGCTAC 156666 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTT---GTC---ATCTACGATGCATCGGTTCACGG 148821 ||| |||| | ||||| ||| | ||| | |||| ||| ||||| | Sbjct 156665 CTCT-TTCAGCTTCGCGAAATCATACGTACGGTCGGGCTGGACGA-ACAT--GTTCAGCG 156610 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | || ||||| || |||||||| ||| || ||| | |||||| || ||||||| Sbjct 156609 CAATCGAGGCCAGGTTGCACACCGCCACTTCGTCCTTCGACGAGTACTCCACAATCTCGG 156550 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 ||| || || ||| ||||| ||| | ||| | ||| ||||| |||| ||||||| Sbjct 156549 TGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACG 156490 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCG 148999 ||||||||||||||||||||||| |||| || |||||||| | ||| | || || | Sbjct 156489 CGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACC 156430 Query 149000 ATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATA 149059 | ||| |||||||| || || | | |||| ||||||| || || || || Sbjct 156429 A--CAGATCCTGCGCCTTTACCTGGCGGATGAAGCGGCCCTCCTTTTCATAACCCGTGTA 156372 Query 149060 CAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACAT 149119 || | ||||||| | ||||| | ||||| | | ||||| || | |||||||||||| Sbjct 156371 CAACTTCTCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACAT 156312 Query 149120 GAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGC 149179 | |||| ||| ||| | |||||||| ||| |||||||| || | ||||||||| Sbjct 156311 CAAACTCCACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGC 156252 Query 149180 GTACATGAGGTCGC--GCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGA 149235 ||| | | ||| | |||| ||| || || ||| |||| ||| | | | Sbjct 156251 GTAAAACATGTCCCTTGCGC---GCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAA 156195 Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC- 149294 || | || | || ||||||||||||| | ||| | || | ||| || ||| Sbjct 156194 AAACTC-AAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCT 156136 Query 149295 --TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAA 149352 ||||||||||| ||||||| || || | ||||| |||| || | ||| ||| | | Sbjct 156135 TATTGCCGCCCTGATCGACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCA 156076 Query 149353 TGCCACTGGCAGTGCCGTTAGT---AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGT 149409 || | | | | ||||| || |||| ||| | || ||| || | || Sbjct 156075 ACCCGTTCGAAATTCCGTTCGTGCCAGAG---ATGTACGTTCCCTTCGCCCGGATGCAGT 156019 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469 ||||||| | |||||||| ||| | |||| ||||| ||||| | ||||| Sbjct 156018 GCACGTTCAGCCCGATGCCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGT 155959 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 |||||||||||||||||||||| |||||||||||||||||| || ||| || | Sbjct 155958 CGTAGATGCCCTCGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGG 155899 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 || ||||| | |||||||||||||| || || || ||||| || || | Sbjct 155898 GACGCTGCGTGGCCGCCGCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGA 155839 Query 149590 TCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGC 149649 || | ||||| ||||| | | || ||||| ||| |||||||| |||||||||| Sbjct 155838 GCAGATTGTACGTCTCGATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGC 155779 Query 149650 GCATCAGCATATGCTGCGGTCGCTC 149674 ||||||||||||||||||| | ||| Sbjct 155778 GCATCAGCATATGCTGCGGCCTCTC 155754 >seq490 Length=13136524 Score = 127 bits (140), Expect = 2e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| ||| || || ||| |||||| | Sbjct 5732690 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT--ACGTCCGTCCTCCA 5732633 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || |||||||| || || ||||| || |||||||| || Sbjct 5732632 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGA 5732573 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||||| |||||| | ||||| || || | |||| ||| |||| Sbjct 5732572 TCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACCTCCAGAGTGATGGTCTTGC 5732513 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||| |||||||| Sbjct 5732512 CAGTCAGCGTCTTCACGAAGATCTGCAT 5732485 Score = 123 bits (136), Expect = 2e-23 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| ||| || || ||| |||||| | Sbjct 5731116 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT--ACGTCCGTCCTCCA 5731059 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || |||||||| || || ||||| || |||||||| || Sbjct 5731058 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGA 5730999 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||||| |||||| | ||||| || || | |||| ||| |||| Sbjct 5730998 TCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACCTCCAGAGTGATGGTCTTGC 5730939 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTA 133670 | |||| || || ||||| |||||||| | |||||| Sbjct 5730938 CAGTCAACGTCTTCACGAAGATCTGCAT--CCTATTTA 5730903 Score = 122 bits (134), Expect = 8e-23 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| ||| || || ||| |||||| | Sbjct 5732462 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT--ACGTCCGTCCTCCA 5732405 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || |||||||| || || ||||| || |||||||| || Sbjct 5732404 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGA 5732345 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||||| |||||| | ||||| || || | |||| ||| |||| Sbjct 5732344 TCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACCTCCAGAGTGATGGTCTTGC 5732285 Query 133633 CGGTCAGAGTTTTTACGAAAATCTG 133657 | ||||| || || ||||| ||||| Sbjct 5732284 CAGTCAGCGTCTTCACGAAGATCTG 5732260 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| || || || | | | || || |||||||| || Sbjct 10198995 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCA-TCTTCCAGCTGCTTTCC 10199053 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || ||||||||||||||||| || ||||| ||| Sbjct 10199054 GGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTT 10199113 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | |||||||| || | |||| ||| || |||||||| || Sbjct 10199114 CACGTTCTCGATAGTGTCCGATGGCTCCACTTCCAGCGTGATGGTCTTTCCGGTCAGGGT 10199173 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 10199174 CTTGACGAAGATTTGCATG 10199192 >seq712 Length=12093160 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || |||| | | | ||||| |||| Sbjct 3459590 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCCTCCAGCT 3459648 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||| |||||||| || || ||||| || |||||||| ||||| Sbjct 3459649 GCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCT 3459708 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | || || || | Sbjct 3459709 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATCGTCTTACCCG 3459768 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 3459769 TGAGGGTTTTGACGAAGATCTGCAT 3459793 >seq934 Length=8401807 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || ||||| || || ||| | | | ||||| || Sbjct 268444 AAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA-TCCTCCAG 268502 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || |||||||| || || ||||| || |||||||| ||| Sbjct 268503 CTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGAT 268562 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | |||||| | |||||| || || | |||| ||| ||||| Sbjct 268563 CTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGCGTGATGGTCTTGCC 268622 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| |||||||||||||| Sbjct 268623 GGTGAGTGTTTTCACGAAAATCTGCAT 268649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413149865840