Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq712 96.9 2e-15 seq490 93.3 3e-14 >seq712 Length=12093160 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||||| ||| || || ||| || || |||||||| |||| Sbjct 3459565 CACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 3459624 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || ||||| || || | |||||||||||| ||| Sbjct 3459625 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCG 3459684 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||| || ||||| || ||| ||| |||| || | || || | || Sbjct 3459685 GGATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGAGGGCTCG 3459743 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || ||||| ||||| || | ||||| || ||||||||||| Sbjct 3459744 ACCTCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3459793 >seq490 Length=13136524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || ||| | ||||| ||| |||||| ||| || || || ||||| || || Sbjct 10198965 CCACCTCGCAGACGGAGCACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 10199024 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || |||||||| || |||| |||||||||||| | || Sbjct 10199025 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 10199084 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || ||| || | || | ||||| || ||||| Sbjct 10199085 ATGCCTTCCTTATCCTGAATCTTAGCCTTC-ACGTTCTCGATAGTGTCCGATGGCTCCAC 10199143 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || || ||||| ||||| Sbjct 10199144 TTCCAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATTTGCAT 10199191 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || | || ||| || || |||||||| ||||| Sbjct 5731138 ACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5731079 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| || || ||||| || |||| ||||||||||||| |||| Sbjct 5731078 CAGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 5731019 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| || | || | ||||| | || | Sbjct 5731018 GATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATCGTGTCCGACGGCTCGA 5730960 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || ||||| || || ||||||||||| Sbjct 5730959 CCTCCAGAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 5730911 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||||| || || ||| |||| |||| ||||| ||||| || Sbjct 5732904 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGTTTGCCGGCGAA 5732845 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||||||| |||| | || || ||||| || || ||| || | Sbjct 5732844 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGT 5732786 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||| | || || || | ||||| || || || || | ||| || | Sbjct 5732785 TCTCAATCGTGTCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCA 5732726 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 5732725 CGAAGATCTGCATA 5732712 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || | || ||| || || |||||||| ||||| Sbjct 5732712 ACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5732653 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| || || ||||| || |||| ||||||||||||| |||| Sbjct 5732652 CAGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 5732593 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| || | || | ||||| | || | Sbjct 5732592 GATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATCGTGTCCGACGGCTCGA 5732534 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||| || || |||||||||||| Sbjct 5732533 CCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATA 5732484 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || | || ||| || || |||||||| ||||| Sbjct 5732484 ACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5732425 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| || || ||||| || |||| ||||||||||||| |||| Sbjct 5732424 CAGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 5732365 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 5732364 GATTCCCTCCTTGTC 5732350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698928302720