Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq490 104 6e-17 seq712 87.8 4e-12 >seq490 Length=13136524 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| |||||||||| || ||||| |||| Sbjct 10199177 CAAGACCCTGACCGGAAAGACCATCACGCTGGAAGTGGAGCCATCGGACACTATCGAGAA 10199118 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || || ||||| || ||||| || | || ||||| Sbjct 10199117 CGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGTCTGATCTT 10199058 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| |||||||||| | || || | || ||||| ||||||| ||||| Sbjct 10199057 CGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAATATCCAGAAGGAGTC 10198998 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 10198997 CACTCTCCATCTGGT 10198983 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || || ||||| ||||| ||||||| ||| ||||| | || || | ||||||||| Sbjct 10198983 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCC 10199042 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| || || || ||| Sbjct 10199043 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGA 10199075 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || |||||| |||| || || || ||||| | || Sbjct 5732272 AAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGACACGATTGAGAAC 5732331 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| ||| || || | || |||||| Sbjct 5732332 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTC 5732391 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 5732392 GCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 5732451 Query 206365 AC 206366 || Sbjct 5732452 AC 5732453 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || |||||| |||| || || || ||||| | || Sbjct 5732500 AAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGACACGATTGAGAAC 5732559 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| ||| || || | || |||||| Sbjct 5732560 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTC 5732619 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 5732620 GCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 5732679 Query 206365 AC 206366 || Sbjct 5732680 AC 5732681 >seq712 Length=12093160 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || ||||| || | || || || || || Sbjct 3459790 CAGATCTTCGTCAAAACCCTCACGGGTAAGACGATTACCCTTGAGGTCGAGCCCTCGGAT 3459731 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 3459730 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 3459671 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || || |||| |||||| || Sbjct 3459670 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATC 3459611 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 3459610 CAGAAGGAGTCGACCCTTCATCTGGT 3459585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181801630127986