Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq302 241 2e-57 seq848 150 3e-30 seq391 129 8e-24 seq799 96.9 5e-14 >seq302 Length=5740867 Score = 241 bits (266), Expect = 2e-57 Identities = 348/485 (72%), Gaps = 12/485 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||| ||||||| || ||||| |||||| |||| | ||| Sbjct 73572 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTGGACCTCTCGAAGGACATGAAGGACT 73513 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| ||||||| | ||| |||||| || |||||| |||||| || ||||| ||| || Sbjct 73512 GGGATTCGCTGAA-GCCGAGCGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTT-GC 73455 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| || || |||||| |||||| |||| | ||||| | | ||||| || | Sbjct 73454 CGCCTCGGACGGTATCGTGAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGT 73395 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | | ||||| || | || |||||||| ||||| || || || ||| | ||| || | Sbjct 73394 GACGGAGGCTCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAGAT 73335 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 |||||||| ||||||||||| ||| | |||||| ||| ||| |||| || Sbjct 73334 GTACTCGCTGCTGATCGACACGTACATTCGCGACCCGAAGGAGCGGGAGTACCTGTTCAA 73275 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC-- 1456152 ||| ||||| ||| | |||| |||| ||| ||||||||||||||| |||| |||||| Sbjct 73274 CGCGATCGAAACGCTCCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTC 73215 Query 1456153 -AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGC 1456210 | |||| ||| | |||||| |||||| | || | || || | |||||||||| Sbjct 73214 GAGCAAGCAGGCC-----AACTTTGGCGAGCGAGTGGTGGCGTTCGCTGCCGTCGAGGGC 73160 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 ||||| ||| || || ||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 73159 ATCTTCTTCAGTGGAAGCTTCGCGGCCATCTTCTGGCTGAAGAAGCGTGGCCTGATGCCG 73100 Query 1456271 GGTCT 1456275 ||||| Sbjct 73099 GGTCT 73095 >seq848 Length=3946 Score = 150 bits (166), Expect = 3e-30 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| |||||||| || ||| |||| || ||| | Sbjct 3429 ATCTACAAGGTGCTGAAGCAAGTGCACCCGGACAC---TGG--CATC-TCGTCGAAGGCT 3482 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| ||||||| Sbjct 3483 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCGGCCGAGGCGTCC 3542 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| |||||| | ||||| ||||||||||||||| Sbjct 3543 CGTCTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAGACCGCCGTG 3602 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| |||||||||||| |||||||| Sbjct 3603 CGTCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCGGAGGGCAC 3652 >seq391 Length=2819257 Score = 129 bits (142), Expect = 8e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004 ||||| ||| || ||| ||||| ||||||||| || |||| | ||| ||||| Sbjct 155888 CACGCAGCGTCCCCAGCTGTCGTCTTGCTTTCTGCTGACCATGTCCGACGACAGCATCGA 155947 Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||||||||| |||||||| ||||||||||| || ||||||||| ||||||| |||||||| Sbjct 155948 GGGCATCTACGACACGCTGAAGCAGTGCGCACTGATCTCCAAGTCGGCCGGTGGCATCGG 156007 Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124 | || ||| | || || ||| | ||| | | ||||| ||||| || Sbjct 156008 GCTGAACGTGCACTGCATCCGGGCGAAGGGAACGTACATCTCTGGCACGAACGGAATTTC 156067 Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTG 260184 ||||| | || || ||||| ||||| | ||| | ||||| || |||||||| ||| | Sbjct 156068 GAACGGGTTGGTACCGATGCTGCGCGTGTACAACAATACGGCACGGTACGTCGATCAGGG 156127 Query 260185 C 260185 | Sbjct 156128 C 156128 >seq799 Length=4356 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || || || || || ||| || || || |||| | Sbjct 2605 ATCTACAAGGTGTTGAAACAAGTCCATCCGGATACC---GGAATTTCTTC---CAAGGCG 2658 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| |||| || Sbjct 2659 ATGAGCATCATGAACAGCTTCGTGAACGACATTTTCGAGCGCATCGCTGCCGAAGCATCC 2718 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||||| || ||||||||| |||||| | ||||| ||||| || ||||| Sbjct 2719 CGCTTGGCGCACTACAACAAGCGTTCGACGATCACGTCCCGCGAAATCCAAACGGCCGTC 2778 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| || || |||||| ||||||||| ||||| ||||| Sbjct 2779 CGTCTGCTGTTGCCTGGTGAGTTGGCCAAGCACGCCGTGTCCGAAGGCAC 2828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177689091973092