Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq368 107 2e-18 seq302 105 8e-18 >seq368 Length=3665626 Score = 107 bits (118), Expect = 2e-18 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||||| || ||| ||| |||||||| | | ||||| || || || Sbjct 2226853 GTGAAGATGTACCTCGGACTAG-CGCTATCCTTGCCACCGGTCAACCGCGTACCGAACTG 2226911 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || || |||||||| ||||| ||| | ||||| | |||| ||||| Sbjct 2226912 ACCGCCCGGAAACAGTAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTGAC 2226971 Query 179157 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213 ||||| || | || || ||| ||||| ||||| || ||| | |||||||| | Sbjct 2226972 GATCGT---CGAGCAAAGCGATTGTTCGCCGTGGTGGTACGCGGACATTTCCGCCACCGA 2227028 Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 179273 |||||| |||||||||||||| ||| |||| || | |||||||| ||| Sbjct 2227029 ACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCACGTGAACAG 2227088 Query 179274 CACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 |||||| | || ||||| |||||||| Sbjct 2227089 CACCTTCCGCTGGCCCGGCTTCAGGCCGTC 2227118 >seq302 Length=5740867 Score = 105 bits (116), Expect = 8e-18 Identities = 249/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 11847 CCACAAAATGAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGT-TG 11904 || || || || ||||||| |||||||| || || || | | | | ||||| | | Sbjct 883031 CCGCAGAACGAAAAGACGCCATTCTATCCGCGCTCGCCGTACG-CATGTGCAAAGATGTA 882973 Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| | ||| | |||| || || || || | || | | || || ||| ||| | Sbjct 882972 CGGCT-ACTGGATAGTGATCAACTATCGCGAGGCGTACAATATGTTCGCCTGCAATGGGA 882914 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CC 12023 | || ||||||||||| |||||||| || || | |||| ||||| ||||||| || Sbjct 882913 TCCTGTTCAACCACGAATCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCC 882854 Query 12024 GAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAA 12082 | | ||| | || | || | ||| || ||||| | | || |||| || ||| | Sbjct 882853 GCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGA 882796 Query 12083 CGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCA 12142 | || | |||||||| || ||||| ||||| ||||| || |||||| | | | || Sbjct 882795 TTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCA 882736 Query 12143 ACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 || || || |||| || | |||| |||||||||| || || ||||| || | ||||| Sbjct 882735 GCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTGAGTT 882676 Query 12203 CGTTGAG 12209 || ||| Sbjct 882675 TGTCGAG 882669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||||||||| ||||| | || |||||||| |||||| Sbjct 73040 GGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAGAACGTCAGACC 73099 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| || || |||||||||| |||||| || || || ||| ||||||||| Sbjct 73100 CGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCACTGAAGAAGAT 73159 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || |||||||| | | ||||| ||||| | ||| | | Sbjct 73160 GCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGCTTGCTCGAGAT 73219 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| |||| |||||| | ||||| |||| | ||||||| || | |||||| Sbjct 73220 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCGATCGC 73273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425413262960