Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq391 215 6e-51 seq302 136 4e-27 seq368 132 5e-26 >seq391 Length=2819257 Score = 215 bits (238), Expect = 6e-51 Identities = 462/685 (67%), Gaps = 4/685 (1%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| || || |||| ||| ||||| || | ||| | | || ||| ||||| Sbjct 155850 TACTTTACCCATGCTTCGCCGACCATGTTCGCGGCGGCCACGCAGCGTCCCCAGCTGTCG 155909 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| ||| || | ||| || ||| ||||| ||||||||||| ||||| ||| Sbjct 155910 TCTTGCTTTCTGCTGACCATGTCCGACGACAGCATCGAGGGCATCTACGACACGCTGAAG 155969 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448 |||| || | |||||||||| | | ||||| ||||| | || ||| | | |||| Sbjct 155970 CAGTGCGCACTGATCTCCAAGTCGGCCGGTGGCATCGGGCTGAACGTGCACTG-CATCCG 156028 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 ||||| || || ||| || |||||||| | | | || | || || ||||| Sbjct 156029 GGCGAAGGGAACGTACATCTCTGGCACGAACGGAATTTCGAACGGGTTGGTACCGATGCT 156088 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGT 53567 ||||| | |||||| ||||| ||||||||| | ||||| || ||||| | ||| | Sbjct 156089 GCGCGTGTACAACAATACGGCACGGTACGTCGATCAGGGCGGCAATAAGCGGCCAGGTG- 156147 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 |||| ||||||||||| ||||||||||||| ||| | | |||||| | || ||| Sbjct 156148 CGTTTGCCATCTACCTGGAGCCGTGGCACGGCGATGTGTTTGAGTTTTTAGATCTGAAGA 156207 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| ||||| | ||| ||||| || || ||||| |||| Sbjct 156208 AAAACACCGGCAAGGAGGAGGTGCGCGCAAGGGACATGTTTTACGCGCTCTGGATACCGG 156267 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 | || |||||||| |||||| | |||| |||| ||||||||||| |||| | Sbjct 156268 ATCTGTTCATGCAGCGCGTGGAGGCGAACGAAACGTGGAGTTTGATGTGCCCGCACGACT 156327 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 | ||||| | | | | || || ||||| | || |||| | || | | Sbjct 156328 GTCCCGGATTGGCCGATTCGTGGGGCGAAGAGTTCGAGAAGTTGTACACGGGTTATGAAA 156387 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 ||||||||| || |||| ||||||| || | ||| ||| ||| || | Sbjct 156388 AGGAGGGCCGCTTCATCCGCCAGGTAAAGGCGCAGGATCTGTGGTTTGCGATCATCGAAT 156447 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 ||||||||||||||| ||||||||| |||||||| || ||| || |||| Sbjct 156448 CCCAGGTGGAGACGGGCGTACCGTACATGCTGTACAAGGACGCGTGCAATCGCAAAAGCA 156507 Query 53928 ACCAGAAGAACATCGGCGTCATCAA 53952 |||| | ||||||||| |||||| Sbjct 156508 ACCAACAAAACATCGGCACCATCAA 156532 Score = 118 bits (130), Expect = 1e-21 Identities = 295/445 (66%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| | ||||| ||||| || || |||||||| || || |||||||| Sbjct 157041 CGCAACTCACTGCTGCTCGCGCCGATGCCGACGGCTTCGACGGCACAAATTTTGGGCAAC 157100 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| ||||||||||||||||| ||||| ||||| || || || | || ||| Sbjct 157101 AACGAGTCGTTCGAGCCGTACACGTCCAACGTCTACAACCGGCGCGTTCTGTCGGGCGAG 157160 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| || | ||| | ||||| ||||||| ||| | | | |||| || Sbjct 157161 TTTCAGGTGGTGAACCACCACCTGATCAAGGATCTGACCACGCACGGTCTGTGGGACGAT 157220 Query 55664 CAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT 55720 | || |||| || || || || || ||||||| | | | || || Sbjct 157221 GATATGAAGAACACAATCCTGGCCCACAACGGTTCGATCCAGAACATCGAACAAATACCG 157280 Query 55721 CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC 55780 | | || | ||| ||||| ||||||||| | ||| | || | Sbjct 157281 AAGGAAGTGCGCGATCTGTACAAAACGGTTTGGGAGATTTCGGTGAAAACGTGCATCCAG 157340 Query 55781 ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG 55840 ||| || || || ||||||| |||||| ||||| ||||| | |||||| | ||| | Sbjct 157341 ATGGCAGCCGACCGGGGTGCGTTCATCGATCAGTCGCAGTCGTTCAACATCCACGTGGCG 157400 Query 55841 AATCCTTCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 | || ||| | |||| ||| || |||||||| ||| |||||||| ||| || || Sbjct 157401 GAACC-GAACTACGGCAAGCTGACGTCAATGCACTTCCACGCGTGGAAGATGGGCCTGAA 157459 Query 55900 GACGGGTATGTACTATCTGCGGACC 55924 ||| || ||||||||| |||| ||| Sbjct 157460 GACTGGCATGTACTATTTGCGCACC 157484 >seq302 Length=5740867 Score = 136 bits (150), Expect = 4e-27 Identities = 255/370 (69%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| ||||||||| | |||||| || ||||| | || || |||||||| Sbjct 882663 CGCCTGCTCGACAAACTCACGCACCGAGTGCGTTTCGCCCGTCGCGATGACAAAATCTTC 882722 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| | |||||| || | |||||||| | ||||| ||||| Sbjct 882723 CGGCTGCTCCTGCTGCATCATCAACCACATCGCCTCAACGTAGTCTTTGGCGTGGCCCCA 882782 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||||||||| | ||| || || || ||||||| || || ||| | || Sbjct 882783 GTCGCGCTTCGAATCGAGATTACCCAGCTCGACGCACTCCTGCTGACCGAGCGAAATCTT 882842 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 | || || | | | || ||||||||||||||||| | ||| || || || || Sbjct 882843 CGCCACCGAGC---GGGTGATCTTGCGCGTCACAAAATTCTCACCCCGCCGGGGTGATTC 882899 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 |||||||||||| || ||| | || || ||||| ||||| |||||| ||||| || Sbjct 882900 GTGGTTGAACAGGATCCCATTGCAGGCGAACATATTGTACGCCTCGCGATAGTTGATCAC 882959 Query 124775 CATCCAATACCCAAAGAGC-TTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| || || | | | ||| ||| | | || || || || |||||||| || | Sbjct 882960 TATCCAGTAGCCGTACATCTTTGCACATG-CGTACGGCGAGCGCGGATAGAATGGCGTCT 883018 Query 124834 TTTCATTTTG 124843 |||| || || Sbjct 883019 TTTCGTTCTG 883028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 325/494 (66%), Gaps = 21/494 (4%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || ||||| |||| || || ||||| || ||||||||||||| ||| |||||| Sbjct 73074 ATCAACTCGTTCGAGAACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATG 73133 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || |||| ||||||||||||||||| ||||| || || || || | || | | Sbjct 73134 GCCGCGAAGCTTCCACTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCT-C 73192 Query 74904 GCGAACGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC 74959 || || | || | | | ||||| || | ||||| || || ||| | | Sbjct 73193 GCCAAAGTTGGCCTGCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGC-CTTCTTCTTCA 73251 Query 74960 CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCT-CTTCGGGATCCTTGACG 75017 |||| |||| || |||||||| | ||| ||| || || ||||||| || | | Sbjct 73252 CGCACGGGAGCGTTTCGATCGCGTTGAACAGGTACTCCCGCTCCTTCGGG-TCGCGAATG 73310 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 | |||| |||| || |||||| |||| || | ||| | ||| || Sbjct 73311 TACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAAC 73370 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT--TTGAAAAATTCATGTCGATAT 75135 ||||||| | || ||||| | | ||| || |||| |||| || | | || Sbjct 73371 CCGTAGAAGCAGCGAGCCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTC--CACCAGAT 73428 Query 75136 TCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGC 75195 |||| | ||||| |||||||||||||| || || ||||| || ||| ||||| | Sbjct 73429 TCTCGTTCACGATACCGTCCGAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGAC 73488 Query 75196 GCTC-ATCG---TCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCC 75251 |||| ||| |||| || ||||| ||||||| |||| || | || | ||| Sbjct 73489 GCTCGCTCGGCTTCAGCGA----ATCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCT 73544 Query 75252 TCGACCGTCCAGAA 75265 || || |||||||| Sbjct 73545 TCCACGGTCCAGAA 73558 >seq368 Length=3665626 Score = 132 bits (146), Expect = 5e-26 Identities = 284/418 (68%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | |||| | ||||| | || |||||| |||||||| ||||| Sbjct 2227587 CAGCTCCGGCCAGTTCGTATGGATAAAGTTGATTAGCAGGCCCTTAATGTGCGACCCGTC 2227646 Query 152802 AAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCGCAGGTCACGTAGTGAC 152856 ||||| || ||||||||||||| | || ||||||||| ||| | || Sbjct 2227647 CTGATCCTGATCCGTCATGATCATCACCTTGCCGTACCGTAGCGTCT-TCAGATCGTCCG 2227705 Query 152857 CCGT-AGACCTTTC--CATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCT 152911 ||| ||| |||| | ||| || |||||||||||||| | |||||| | ||| Sbjct 2227706 TCGTCAGATATTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATCTCCG 2227765 Query 152912 CATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTG 152971 | || || | ||| || ||| || || || || || || |||| || || || | Sbjct 2227766 CGTTCTCCAGGATCTGCTTGTGCGTCGCTTCGCGCACGTTCAGCAGCTTACCGCGCAGCG 2227825 Query 152972 GAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCG 153031 ||||||| ||| ||| || ||| || || || | ||| || | | || | | ||| | Sbjct 2227826 GAAACACACCGTACGTGTCGCGCCCGACCACTCCCAGCCCCGATACGGCCAACGTTTTGG 2227885 Query 153032 CCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGT 153091 ||||||| |||||||| | || ||||| |||| | | || ||| ||||| || Sbjct 2227886 CCGAGTCTCCCTCGGTCAGGATGAGCGTGCAGTTGAGCGAATTGCGAGACCCGGCATCGT 2227945 Query 153092 TGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149 | ||||| || || || || || ||| ||||| | ||||| |||||| ||||| Sbjct 2227946 TCGCGTCCTCCAGTTTCGGAATGCCCTTGATCTTCGACTTCTTTGAGCCGGACGTTTT 2228003 Score = 129 bits (142), Expect = 6e-25 Identities = 308/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || |||||||||| ||| | |||||||||||| || || | Sbjct 2226700 CCCGTACCGATACCGTCCGCACCGTTGATCAGCAGCATCGGCACAATCGGCAGATACCAA 2226759 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||||| | | | || ||| || | || | || | | || ||| |||| Sbjct 2226760 ACCGGCTCGATCCGCTGGTTGTCCTCGTACTGATACTCCAGCAGCGGATCGTCCAGCGGA 2226819 Query 151996 TCGAATATCCGTCGAGTCATAG--GAC-TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | |||||| | || |||| | ||| ||| |||||||||||| | | || || Sbjct 2226820 TGGAATATGCACCGCGTCAGTGCCGACATCAT---CGTGAAGATGTACCTCGGACTAGCG 2226876 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 |||||||||||| | || |||||| || ||||| || || || || |||| | Sbjct 2226877 CTATCCTTGCCACCGGTCAACCGCGTACCGAACTGACCGCCCGGAAACAGTAGATTGATG 2226936 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT---GCCCTGCAGACTCGCT 152169 |||||| || ||| | ||||| |||| || || ||||| || || || | | Sbjct 2226937 TTGTTGCTACCGACGTAGTTCTGCGCCAGGTTGACGATCGTCGAGCAAAGC-GATT--GT 2226993 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA-- 152227 || |||||||| ||||| | | ||||| | | ||||||| |||||||||||||| Sbjct 2226994 TCGCCGTGGTGGTACGCGGACATTTCCGCCACCGAACCCGCCAGCTGCGCCACCTTCACC 2227053 Query 152228 TGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCA 152287 | || | |||| || ||||| || | | | | |||||| |||||| || |||| Sbjct 2227054 TCTCGCTTGTCA--TTACGCTTGAAGCACGTGAACAGCACCTTCCGCTGGCCCGGCTTCA 2227111 Query 152288 AACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||| |||| || ||||| ||| | ||||| Sbjct 2227112 GGCCGTCCAGCACGGACGGGATCGAGCGCACGTTGTCC 2227149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207340306800