Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq113 159 3e-34 seq490 149 5e-31 seq712 125 6e-24 >seq113 Length=5901441 Score = 159 bits (176), Expect = 3e-34 Identities = 206/282 (73%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| ||| ||||||||||||| || | |||| | ||| || | ||| |||||| Sbjct 1291625 ACGCACGACGACCTGTGGAACGCGGCCCAGCTGCAGATGGTGCGGGAGGCCAAGATGCAC 1291684 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || || |||||||||| ||||| || |||||| |||| ||| | | |||| | ||| Sbjct 1291685 GGCTTCCTGCGCATGTACTGGGCGAAGAAGATACTGGAGTGGACGCGAACGCCCGAGGAG 1291744 Query 135581 GCGCTACAACAC-GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAA 135639 ||||| | | || || || | | || ||| ||||||| | || || ||||| | || Sbjct 1291745 GCGCT-CGAGACGGCCATCTACCTGAACGATCGCTACAGTCTGGACGGGCGCGACCCGAA 1291803 Query 135640 TGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCG 135699 || ||||| ||||| |||||||| || || | ||||| || || ||||||||||| Sbjct 1291804 CGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGACCAGGGCTGGAAGGAGCG 1291863 Query 135700 CAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 | | | || ||||| |||||||| |||||||| ||||| || Sbjct 1291864 CGACATATTCGGCAAAATTCGCTACATGAACTACGACGGCTG 1291905 >seq490 Length=13136524 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||||| || || || ||||| Sbjct 5732713 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5732772 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 5732773 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5732832 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||||||| |||| ||| | || | ||||| |||||| Sbjct 5732833 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 5732892 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||||| || ||||| | ||| |||| || || Sbjct 5732893 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGG 5732939 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||||| || || || ||||| Sbjct 5732485 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5732544 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 5732545 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5732604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| ||| | || | ||||| |||||| Sbjct 5732605 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 5732664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| || || || Sbjct 5732665 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 5732714 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||||| || || || ||||| Sbjct 5730911 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5730970 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 5730971 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5731030 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| ||| | || | ||||| |||||| Sbjct 5731031 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 5731090 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| || || || Sbjct 5731091 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 5731140 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| || || || || ||||| |||||| | || ||||| || || || ||||| ||| Sbjct 5732260 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGAC 5732319 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 ||||||||| || || || || || ||||| || || || || || ||||| ||| Sbjct 5732320 ACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5732379 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 ||| | || | ||||||||| || |||| ||| | || | ||||| |||||||| Sbjct 5732380 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATC 5732439 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| || ||||| | ||| |||| || || || Sbjct 5732440 CAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 5732486 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| ||||||||||| || ||||| || | || || || || || | | Sbjct 10201655 GCCATGCAGATTTTTGTAAAAACGCTAACCGGAAAAACGATCACGCTCGACGTCGCCGCC 10201596 Query 27045 TCCGACTCGATT-GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || || || |||| ||||| ||||| | || || || || |||| || Sbjct 10201595 TCGGAAACGGTTCTAGAT-ATCAAAAGTAAAATCGAGGAACGCGAGGGTATTGCACCAGA 10201537 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||||| | || | ||||||||| || |||| || | | | |||||||| Sbjct 10201536 CCAACAGCGCATCATCTTCGCCGGCAAGCAGCTGGACGATGGCCGAATTATCTCCGATTA 10201477 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || | | ||||| | ||| |||| |||| ||| ||||||||| Sbjct 10201476 CAACATCCAGCACGGATCGACGATGCATCTGGTGCTGCGGTTGAAGGGTGGCAT 10201423 >seq712 Length=12093160 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 3459793 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATTACCCTTGAGGTCGAGCCCTCG 3459734 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 3459733 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 3459674 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 3459673 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 3459614 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| |||| |||| ||||| Sbjct 3459613 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 3459567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911517416320