Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1391 188 6e-43 seq147 136 3e-27 seq2452 114 1e-20 >seq1391 Length=279726 Score = 188 bits (208), Expect = 6e-43 Identities = 718/1114 (64%), Gaps = 40/1114 (4%) Strand=Plus/Plus Query 132906 GCGGGTTTTGTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAG 132965 || || || |||||||| || |||||||| ||||||| | ||| ||| ||||||| Sbjct 1720 GCCGGCTTGGTGCGCAAGTAGTACATGCCAGTTTTCAATCCCATCTTCCAACCGTAAAAA 1779 Query 132966 TGTATGCTCGACACCACCGAG---TAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGA 133022 || || |||| || | | || | || |||||||| | || | |||||| Sbjct 1780 TGGAT---CGACGTCAGCTTGCCATAGTTTGGCTCGGCGACGTGAATGTTGAACGATTGC 1836 Query 133023 CTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTT----GATTT 133078 |||||| || || | | || || || ||||| || || || ||| ||| Sbjct 1837 GACTGATCGATAAACGCTCCCCGATCCGCTGCCATTTTGATGC-ACGTTTTCACCGAT-- 1893 Query 133079 GATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTG 133138 |||||||| |||| ||| | || | | | ||| ||||| | || || || || Sbjct 1894 -ATCTCCCAGACCGTTTTGTACAGGTCGCGTATTTCCTGCGGTATAGCCTCTATCTTTTG 1952 Query 133139 CACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATC 133198 | ||||| || | || || ||| | ||| || || || | | | | | | Sbjct 1953 AATCGACCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAAGCCCATGTT 2012 Query 133199 GATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT 133258 |||| | | | |||| ||||| ||||| || |||||||| | || ||||| || Sbjct 2013 AGTTAGATCCTGCAGCAGATGGTGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCT 2072 Query 133259 GAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGT 133318 | || || ||||| ||| |||| ||||| ||||| || |||||||| || || || || Sbjct 2073 GTTGTAAACGTTCGATGTGTACGGCTCGAACGATTCATTATTGCCGAGGATTTGGGCAGT 2132 Query 133319 CGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTT 133378 || ||||| ||||| |||| || ||| ||||| | | |||| ||| || || Sbjct 2133 CGAAGCCGTCGGCATCGGAGCCAACAGCAACGAGTTGCGGATACCGTGCTTCGCAATCTT 2192 Query 133379 GCACTGCAATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTC 133438 || ||| || ||||| ||| ||| || | ||| | || | || | || Sbjct 2193 TTCCTTCAACTCTGCCCAGTTCCATAGA--GTCG------TAGGCTCCTTGTTCCACATC 2244 Query 133439 GTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGG 133498 | || | |||| || || |||| ||||| ||| || ||||| ||| || || Sbjct 2245 ----TCGT---ACTGCAGGATGCCTTTGCTTACCGGGCTGCCCTCGTACGTTTCGTACGG 2297 Query 133499 TCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGC 133558 ||| | ||||| |||||||||||| |||| || || |||| |||||||| Sbjct 2298 TCCATCACGAGCGGCCAACTCGCAGCTAGCTTCCAGCGCTCCATAGTAGATGGTTTCGAA 2357 Query 133559 GATTGAATAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACA 133616 || | ||| | | || || || ||||| ||||| | ||| || | | | Sbjct 2358 TATCTGTTGGTTCA-GTTTTTGAGCCTCCTCGCTTTCGTACG-GATAGCGCATCAAGATG 2415 Query 133617 AACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTC 133676 ||||| ||||||| ||||| | |||| ||||||||||| || | ||| | | Sbjct 2416 AACGCATCGGCCATGCCCTGCACACCGATGCCGATGGGTCTGTGGCGCATGTTGGAGCGC 2475 Query 133677 TCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATA 133736 | | ||| | | || |||| ||| ||||| ||||| ||||| |||||||| | Sbjct 2476 TTAGCCTCCGGCACAGGGTAGTAGTTAACGTCAATGATTTTGTTCAGATTGCGTGTCACT 2535 Query 133737 ATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCAC 133796 ||||| | || | |||||| | || | || | || ||| | | | ||| || Sbjct 2536 ATTTTGGCCACTTCCTTCAGCTTAGCAAAATCGTACGTTTTGTCCTGC---TTTACGAAC 2592 Query 133797 TTGTTGACGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGG 133856 |||| | ||||| ||||||||| || || || | |||| || | | |||| Sbjct 2593 ATGTTCAGCGCAATCGAGGCTAGATTGCACACCGCTATTTCGTCCTTGGACGAGTACTCC 2652 Query 133857 ACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAG 133916 || ||||||| ||| |||||| || ||||||||||| | || | |||||||| Sbjct 2653 ACAATCTCGGTGCACAGGTTGGAACACTTGATGGTGCCAATGTTCTGCTGATTGCTCTTA 2712 Query 133917 TTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACG 133976 ||| || ||||||||| ||||||||||| | || ||||| || | | ||||| | Sbjct 2713 CGATTACACGCATCCTTGTACAGCATGTACGGTACACCCGTTTCAACCTGCGACTCGATG 2772 Query 133977 ATA--AATCTAAACAAGTCTCTCGCCTTCACCTG 134008 ||| || | | | ||| |||||||||||| Sbjct 2773 ATAGCAAAC--CATAGGTCCTGCGCCTTCACCTG 2804 >seq147 Length=443619 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || || ||||| || | || || || || || ||||||||||| Sbjct 111927 TACCTCCACGAAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCAG 111868 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| ||||||| ||||||||||| || | Sbjct 111867 AGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCTGGGG 111808 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| ||||||| ||||| Sbjct 111807 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGA 111748 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || | || ||||| || |||||||| || |||||||||||| Sbjct 111747 CCTCGAGTGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCATG 111698 >seq2452 Length=1332465 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | |||||| || | || ||||| || || |||||||||||| Sbjct 203865 ACCACCGCGCAGGCGAAGCACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 203924 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || || | || |||||||| ||||| ||||| Sbjct 203925 CAGCGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGATCCGGAGG 203984 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || |||||||| || || || || || | ||||| || |||| | |||||| Sbjct 203985 AATTCCCTCCTTATCCTGGATCTTCGCCTTCACATTTTCGATCGTATCCGAGGGCTCGAC 204044 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 204045 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 204092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433816267025716