Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2230 89.7 3e-13 seq1458 87.8 9e-13 seq502 86.0 3e-12 seq80 84.2 1e-11 >seq2230 Length=1496070 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11448 AATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||| |||||| | || |||||||||| |||||||||||||||||||||||||| Sbjct 1291870 AATCAATCATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGC 1291811 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| |||| |||||||| | |||| Sbjct 1291810 TCTAACCAGCTGAGCTATGGAGCCG 1291786 >seq1458 Length=275439 Score = 87.8 bits (96), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||||| | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 128137 AAGAAATCCGACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 128078 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||| | |||| Sbjct 128077 GCTCTAACCAGCTGAGCTATGGAGCCG 128051 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| | || || | ||| || |||||||||| |||||||||||||||||||| Sbjct 126082 AATAAAAATAACAGATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 126024 Query 11500 CGACGCTCTRACCAACTGAGCTA 11522 ||||||||| |||| |||||||| Sbjct 126023 CGACGCTCTAACCAGCTGAGCTA 126001 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 48133 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 48192 Query 11516 TGAGCTA 11522 ||||||| Sbjct 48193 TGAGCTA 48199 >seq502 Length=388983 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 225013 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 224954 Query 11514 ACTGAGCTA 11522 |||||||| Sbjct 224953 GCTGAGCTA 224945 >seq80 Length=481787 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 171546 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 171487 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 171486 TGAGCTATGGAGCCG 171472 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| ||| || || ||| | |||| | || |||||||||| |||||||||||||| Sbjct 206092 GAAATAAAAATAATCCAAGGACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTA 206151 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTA 11522 ||||||||||||||| |||| |||||||| Sbjct 206152 TTAGCACGACGCTCTAACCAGCTGAGCTA 206180 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 208136 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 208195 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 208196 CTGAGCTA 208203 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 208847 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 208906 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 208907 CTGAGCTA 208914 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 172780 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 172721 Query 11516 TGAGCTA 11522 ||||||| Sbjct 172720 TGAGCTA 172714 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 207667 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 207726 Query 11516 TGAGCTA 11522 ||||||| Sbjct 207727 TGAGCTA 207733 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482681352148