Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1553 206 4e-49 seq136 206 4e-49 seq1899 203 5e-48 seq642 158 2e-34 >seq1553 Length=1447 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 421 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 480 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 481 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 540 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 541 CGTGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAA 600 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| |||| || || |||| |||||||| Sbjct 601 CACGCCAAGCGCAAGACCGTCACAGCGATGGACGTCGTGTACGCGCTGAAGCGTCAAGGT 660 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 661 CGCACTCTGTACGGTTTCGGAGGTTAA 687 >seq136 Length=483744 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| || | | | || ||||||||||| || ||||||||||| || || Sbjct 369365 GCCAAGCGTCATCGCAAGGTGT-TGCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 369423 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| || || |||||| ||||||| || |||| || |||| Sbjct 369424 CCGTCGTCTGGCGCGCCGTGGCGGTGTGAAGCGTATCTCTGGCCTGATCTACGAGGAGAC 369483 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 369484 GCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGA 369543 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| | |||||| | || || || ||||||| || || Sbjct 369544 GCACGCCAAGCGCAAGACGGTCACCGCGATGGATGTGGTGTACGCTCTGAAACGCCAGGG 369603 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | | || ||||| ||| ||||| Sbjct 369604 CCGTACGCTGTACGGTTTCGGAGGTTAA 369631 >seq1899 Length=192821 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| ||||||||||| || ||||| |||||||| ||| Sbjct 192514 GCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAGGGCATCACGAAGCCAGCCATC 192455 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| || || |||||| |||| ||| || |||| || |||| Sbjct 192454 CGTCGTCTGGCCCGCCGTGGCGGTGTGAAGCGTATCTCCGGACTGATCTACGAGGAGACG 192395 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| || ||| | || |||||| Sbjct 192394 CGTGGCGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGCGACGCTGTGACGTACACCGAG 192335 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| |||||| |||||||| | ||||| || |||| || || ||| Sbjct 192334 CATGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCGCTGAAGCGCCAGGGC 192275 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 192274 CGCACTCTGTACGGTTTCGGAGGTTAA 192248 >seq642 Length=4209 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || |||||||| |||||||||||||| || ||| Sbjct 3749 GCCAAGCGTCATCGTAAAGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCGGCCATC 3690 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| |||| || | |||| ||||| | Sbjct 3689 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCGGGTCTCATCTACGAAGAAACG 3630 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | || | | | ||||||| |||||| || ||||||||| Sbjct 3629 CGCGGCGTGCTGAAAGTGTTTTTGGAAAATGTTATCCGTGATGCGGTCACCTATACCGAA 3570 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||| ||| | |||||| | || || || |||| ||||| || Sbjct 3569 CACGCCAAGCGCAAGACTGTAACCGCGATGGATGTAGTGTACGCGCTGAAGCGTCAGGGT 3510 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 3509 CGCACTCTGTACGGTTTCGG 3490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072756057389