Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq169 158 8e-34 seq147 102 5e-17 seq1318 98.7 7e-16 seq2452 96.9 2e-15 seq707 87.8 1e-12 >seq169 Length=466543 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| ||||| |||||| | ||| |||||||| ||||| ||||| Sbjct 222371 ATGGCTACCGTGAACGTGAATCGCAATGTGACCGACATCTTCTACCGTTACAAGATGCCC 222430 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||| ||||| ||||| ||||||||||| || ||||| || || || |||||| Sbjct 222431 CGCATCAACGCAAAGGTAGAGGGCAAGGGAAACGGCATCAAAACGGTGATCGTGAACATG 222490 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || || |||| || || || ||||| ||||| || || || || ||| Sbjct 222491 GCCGAGGTGGCCCGAGCAATCGGTCGTCCGGCAACCTATCCGACCAAGTACTTTGGCTGC 222550 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| || ||||| ||||| ||||| || || Sbjct 222551 GAACTAGGAGCTCAAACGCAATTTGACCATAA 222582 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || || || ||||| | | ||||| |||||||| | || || Sbjct 222654 AACGAACGCTTCATTGTGAATGGTTCGCACGATGCGGCCAAACTGCAGGATCTGCTCGAT 222713 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| || |||||||| ||||| || | ||| || || ||||| ||||| || ||||| Sbjct 222714 GGCTTCATCCGCAAGTTCGTGCTCTGCCCGGAGTGTGACAACCCCGAGACGGATCTTATC 222773 Query 6495 GT---GTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 || ||||| ||| ||| | ||||| ||||||||||| || ||||| | ||| || Sbjct 222774 GTCTCGTCTAAGAAGGGAA---CTATCTCGCAGGGCTGCAAGGCTTGCGGGTTCCACGGT 222830 Query 6552 AAGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 ||| || | ||||| | || || ||||| | |||||||| || Sbjct 222831 CCGCTCGAGGTCAACCACAAGGTTAATACGTTCATCATCAAGAATCCGCC 222880 >seq147 Length=443619 Score = 102 bits (112), Expect = 5e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| ||||| |||||| || ||||| || || ||||||||||| | | || | Sbjct 111913 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGACCA 111854 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || ||||| || || || || || ||||| | ||| | |||||| ||| Sbjct 111853 TCCTCCAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTG 111794 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || ||||||||||| || || || | || || || | ||| || Sbjct 111793 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCGAGTGTGATG 111734 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || || | ||||||||||| |||||||||||| Sbjct 111733 GTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCATGTTT 111695 >seq1318 Length=1979 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 760 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 819 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 820 GGCGGTATTTAGCTTTA 836 >seq2452 Length=1332465 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | |||||||||||| || |||||| || || |||||||| || Sbjct 203865 ACCACCGCGCAGGCGAAGCACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 203924 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || |||||||| || || || |||||||| | || Sbjct 203925 CAGCGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGATCCGGAGG 203984 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || || ||| || || ||||||||| | || ||||| || || Sbjct 203985 AATTCCCTCCTTATCCTGGATCTTCGCCTTCACATTTTCGATCGTATCCGAGGGCTCGAC 204044 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 204045 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 204095 >seq707 Length=3970 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||||||| || ||| ||||| || |||||||| Sbjct 3197 AAGCCCGTTCCCTTGACTGTGGTTTCGCCAGGCTGTACGTAGGGACAGCGGGAATCTCGT 3138 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | ||| ||||||||||||| ||||||| |||| Sbjct 3137 TGCTCCATTCATGCGCGTCAATAATTAGTTGAC 3105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936288362263