Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2523 120 4e-22 seq1920 93.3 5e-14 seq1391 84.2 3e-11 >seq2523 Length=22734 Score = 120 bits (132), Expect = 4e-22 Identities = 247/362 (68%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || || |||||||| | ||||| || || ||||| || | | |||| ||| Sbjct 18427 AACCGGTACCGATACCTTCCGCACCGTTGACCAGCACCATCGGTATGATCGGCAGATACC 18368 Query 171786 AGTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTC 171844 || | ||||| || |||| | ||||| || || | | || || |||||| | Sbjct 18367 AGACAGGTTCGATGCGCA-GATTGTCATCGACCTGGTACTCTAACAGTGGATCGTCCAGC 18309 Query 171845 GGATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGA--G 171902 |||| ||||| | || | || || |||||||||||||||| | || | Sbjct 18308 GGATGGAAGATGTGTCGCGTCAGGGCGGAAAGCATTGTGAAGATGTACCTAG---GACTG 18252 Query 171903 ACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 ||| || ||||| ||| | || ||||| || || ||||||| ||| | || |||||| Sbjct 18251 GCGCTGTCCTTGCCGCCCGTCAGGCGCGTACCGAACTGACCACCCGGATACAGCAGATTG 18192 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 172021 || ||||| ||| | ||| | | |||| ||||| ||||| ||| || || Sbjct 18191 ATGTTGTTGCTACCAACGTAATTCTGCGCCAGGTTGACGATCGTGGAGCAGAGCGACACC 18132 Query 172022 TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATC 172081 ||||||||||||||||| ||||| ||||| || | | |||| ||| |||||||| | | Sbjct 18131 TCACCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCTGCCAGCTGGGCCACCTTTACC 18072 Query 172082 TC 172083 || Sbjct 18071 TC 18070 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 172797 ACTTCCCACGGAGAGGGAACACACCGTA-GTGATCACGACCAACCACAGAAAGACCAGCA 172855 |||| || || || || ||||||||||| ||| |||||||| |||||| || || | Sbjct 17314 ACTTACCGCGCAGCGGAAACACACCGTACGTG-TCACGACCGACCACACCCAGCCCGGAC 17256 Query 172856 ACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTG 172914 || ||||| || || || || || ||||| || | |||||||||||| || | |||| Sbjct 17255 ACGGCGAGCGTTTTGGCTGAGTCTCCCTCGGTAAGGATGAGCGTACAGTTGAGCGAATTG 17196 Query 172915 TGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 172971 | || || || | ||| || || |||| |||||| ||||| | || |||||||| Sbjct 17195 CG-CGAACCGGCATCGTTGGCGTCCTCCAGCTTGGGGATACCCTTGATCTTGGACTT 17140 >seq1920 Length=889085 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || || || ||| | || | | | || || ||| || || || ||||| ||||||||| Sbjct 343345 AACTATCGTGAAGCGTACGATATGTTCGCCTGCAATGGCATCCTGTTCAATCACGAGTCA 343286 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT--GGTATCAAACAAATCG 8766 || || || || | |||| ||||| || |||||| | ||| |||| | ||| Sbjct 343285 CCGCGCCGCGGGGAGAATTTTGTGACGCGCAAAATCACCCGTTCGGTGGCAAAGATTTCG 343226 Query 8767 TCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGAC 8826 | | ||| || ||| | | || |||| || ||| || | || | |||||||| | Sbjct 343225 -CTC-GGTCAGCAGGAATATCTGGAGCTGGGCAATCTCGACTCAAAGCGTGACTGGGGCC 343168 Query 8827 ACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAAT 8886 |||| ||||| || ||||| || |||||||| | | || || ||| | |||| || | Sbjct 343167 ACGCGAAGGATTACGTTGAGGCGATGTGGCTGATGATGCAGCAGGAACGGCCGGAAGATT 343108 Query 8887 ATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 ||| | || ||||| || || ||||| || ||||||| || ||| Sbjct 343107 TCGTCATTGCCACGGGTGAAACGCACTCGGTGCGGGAGTTTGTGGAG 343061 >seq1391 Length=279726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || || || || || ||||| ||||| | | || ||||| | |||||| | ||| Sbjct 2599 AGCGCAATCGAGGCTAGATTGCACACCGCTATTTCGTCCTTGGACGAGTACTCCACAATC 2658 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || |||| || |||| ||| |||||||| | ||||| ||||| ||| ||| Sbjct 2659 TCGGTGCACAGGTTGGAACACTTGATGGTGCCAATGTTCTGCTGATTGCTCTTACGATTA 2718 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 |||||||||||||| |||||||| || ||||| || || |||| || ||||| Sbjct 2719 CACGCATCCTTGTACAGCATGTACGGTACACCCGTTTCAACCTGCGACTCGATGATAGC 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597333640922840