Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1391 138 1e-27 seq147 132 5e-26 seq2452 123 2e-23 >seq1391 Length=279726 Score = 138 bits (152), Expect = 1e-27 Identities = 503/777 (65%), Gaps = 23/777 (3%) Strand=Plus/Plus Query 154662 ATGGTGCCCAGGTTTTTCTGATTCGATTTGATG-TTGCATGCGTCTTTGTACAAAATGTA 154720 |||||||| | ||| | |||||| | | | | | || || || || ||||||| ||||| Sbjct 2683 ATGGTGCCAATGTTCTGCTGATT-GCTCTTACGATTACACGCATCCTTGTACAGCATGTA 2741 Query 154721 CGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCA 154778 ||| |||||||| || || | || || || | | || || | || |||||| Sbjct 2742 CGGTACACCCGTTTCAACCTGCGACTCGATGATAG--CAAACCATAGGTCCTGCGCCTTC 2799 Query 154779 ACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAA 154838 || || | | |||| ||| || |||| || |||||| || || |||||| Sbjct 2800 ACCTGTCGAATAAAGCGACCCTCCTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCG 2859 Query 154839 CTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTT 154898 | || || | ||| ||||||||| || |||||||||| |||||||||||| Sbjct 2860 CCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGACACATCAGACTCCACATTTCGTTC 2919 Query 154899 TGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCC 154958 | || || ||||| |||| |||||| | ||| | ||||| |||| || || || Sbjct 2920 GCCTCGACACGCTTCATGAACAGATCCGGTATCCAGAGGGCGTAAAACATGTCCCGGGCT 2979 Query 154959 TTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGC 155018 ||||| ||| ||||| ||| | || | ||| || |||| || ||||| Sbjct 2980 CGCACCTCTTCTTTGCCGGTGTTTTTCTTAAGATCGAGAAACTCGAATATATCTCCGTGC 3039 Query 155019 CACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGA 155075 |||||||| | ||| | || | ||| || ||| || || || || || || | Sbjct 3040 CACGGCTCGAGATAGATAGCGAACGCTCCAGGCCGTTTGTTGCCACCCTGGTCGACATAC 3099 Query 155076 CGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTG 155135 || | ||| |||||||||||||||| || ||| ||| | | | ||||| || Sbjct 3100 CGTGCCGTATTGTTGTACACGCGCAACATCGGCACCAGTCCGTTTGAAATTCCGTTCGTA 3159 Query 155136 CCACGTAT-CGCGCTGC---CGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCC 155191 ||| ||| || | | |||| | | || || || || | ||| | ||| || Sbjct 3160 CCAGATATGTACGTTCCCTTCGCGCGGATGC----AGTGCACGTTCAGGCCAATACCACC 3215 Query 155192 GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTC 155251 | | |||| || || | ||||| | | | || ||||| || || | ||| ||||| Sbjct 3216 GGCAGATTTGGAAATAAGGGCACACTGCTTGAGCGTATCGTAGATACCCTCGATACTGTC 3275 Query 155252 TTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAA 155311 || || |||| || ||||| ||||| | || || | | | | |||||||| Sbjct 3276 ATCGGACATGGTCAGCAGAAAACAGGAAGACAGCTGGGGCCGCTGCGTGGCCGCCGCAAA 3335 Query 155312 TAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA--AG-TTGTAAGTTTCGAT 155368 | || || ||| || || || | | ||| | || ||||| |||||||| Sbjct 3336 CATGGTCGGTGAAGCATGGGTGAA---GTAGCGCTCGGACAGCAGATTGTACGTTTCGAT 3392 Query 155369 GGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 || || || ||||| ||||| |||||||| || ||||||||||||||||| || Sbjct 3393 CGCTGCATCGATGTCTTCGCCGTGGATACCGATGGCGACGCGCATCAGCATGTGCTG 3449 Score = 111 bits (122), Expect = 2e-19 Identities = 211/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||||||||||||||| || ||||| | ||||| || || | || || ||||| Sbjct 2089 GTGTACGGCTCGAACGATTCATTATTGCCGAGGATTTGGGCAGTCGAAGCCGTCGGCATC 2148 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || ||| ||||| || | |||||| || ||||| || || |||||| Sbjct 2149 GGAGCCAACAGCAACGAGTTGCGGATACCGTGCTTCGCAATCTTTTCCTTCAACTCTGCC 2208 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||| | | ||||| | | ||||||||| ||||| |||| | || || Sbjct 2209 CAGTTCCATAGAGTCGTAGGCTCCTTGTTCCACATCTCGTACTGCAGGATGCCTTTGCTT 2268 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||| ||| | || | |||||| || | | ||||| ||||| || ||| Sbjct 2269 ACCGGGCTGCCCTCGTACGTTTCGTACGGTCCATCACGAGCGGCCAACTCGCAGCTAGCT 2328 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | ||| ||||||| | ||||||| || |||| ||| | ||| || | || Sbjct 2329 TCCAGCGCTCCATAGTAGATGGTTTCGAATATCTGTTGGTTCAGTTTTTGAGCCTCCTCG 2388 Query 154371 CTTTCGTACGG 154381 ||||||||||| Sbjct 2389 CTTTCGTACGG 2399 >seq147 Length=443619 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||||| |||||||| || || ||||||||||| | Sbjct 111926 ACCTCCACGAAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGA 111867 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || |||||||||||||| | ||||| |||||||| || || || Sbjct 111866 GAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCTGGGGG 111807 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| ||| ||| | || || | || || Sbjct 111806 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 111747 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| || | |||||| |||||||| ||||| || Sbjct 111746 CTCGAGTGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCATGTT 111696 >seq2452 Length=1332465 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | |||||| | ||||| ||||| || || || ||||||||||| | Sbjct 203865 ACCACCGCGCAGGCGAAGCACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 203924 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||||||| |||| || ||||| || || ||||| Sbjct 203925 CAGCGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGATCCGGAGG 203984 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| || | ||||| || || || Sbjct 203985 AATTCCCTCCTTATCCTGGATCTTCGCCTTCACATTTTCGATCGTATCCGAGGGCTCGAC 204044 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 204045 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 204095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628105618120