Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2523 114 2e-20 seq1920 89.7 6e-13 >seq2523 Length=22734 Score = 114 bits (126), Expect = 2e-20 Identities = 246/362 (68%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || || |||||||| | ||||| || || ||||| || | | |||| ||| Sbjct 18427 AACCGGTACCGATACCTTCCGCACCGTTGACCAGCACCATCGGTATGATCGGCAGATACC 18368 Query 175806 AGTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTC 175864 || | ||||| || |||| | |||||| || || | | || || || ||| | Sbjct 18367 AGACAGGTTCGATGCGCA-GATTGTCATCGACCTGGTACTCTAACAGTGGATCGTCCAGC 18309 Query 175865 GGATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGA--G 175922 |||| ||||| | || | || || |||||||||||||||| | || | Sbjct 18308 GGATGGAAGATGTGTCGCGTCAGGGCGGAAAGCATTGTGAAGATGTACCTAG---GACTG 18252 Query 175923 ACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 ||| || ||||| ||| | || ||||| || || ||||||| || | || |||||| Sbjct 18251 GCGCTGTCCTTGCCGCCCGTCAGGCGCGTACCGAACTGACCACCCGGATACAGCAGATTG 18192 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 || ||||| || | || | | ||||| ||||| ||||| ||| || || Sbjct 18191 ATGTTGTTGCTACCAACGTAATTCTGCGCCAGGTTGACGATCGTGGAGCAGAGCGACACC 18132 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 ||||||||||||||||| ||||| |||||||| | | |||| ||| |||||||| | | Sbjct 18131 TCACCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCTGCCAGCTGGGCCACCTTTACC 18072 Query 176102 TC 176103 || Sbjct 18071 TC 18070 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 176817 ACTTCCCGCGGAGAGGGAACACACCGTA-GTGATCACGACCAACCACAGAGAGACCAGCA 176875 |||| ||||| || || ||||||||||| ||| |||||||| |||||| || || | Sbjct 17314 ACTTACCGCGCAGCGGAAACACACCGTACGTG-TCACGACCGACCACACCCAGCCCGGAC 17256 Query 176876 ACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTG 176934 || ||||| || || || || || ||||| || | |||||||||||| || | |||| Sbjct 17255 ACGGCGAGCGTTTTGGCTGAGTCTCCCTCGGTAAGGATGAGCGTACAGTTGAGCGAATTG 17196 Query 176935 TGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 | || || || | ||| || || |||| |||||| ||||| | || |||||||| Sbjct 17195 CG-CGAACCGGCATCGTTGGCGTCCTCCAGCTTGGGGATACCCTTGATCTTGGACTT 17140 >seq1920 Length=889085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 193/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || ||||| ||| | || | | | || | ||| || || || ||||| ||||||||| Sbjct 343345 AACTATCGTGAAGCGTACGATATGTTCGCCTGCAATGGCATCCTGTTCAATCACGAGTCA 343286 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT--GGTATCAAACAAATCG 10681 || || || || | |||| ||||| || |||||| | ||| |||| | || Sbjct 343285 CCGCGCCGCGGGGAGAATTTTGTGACGCGCAAAATCACCCGTTCGGTGGCAAAGATTTC- 343227 Query 10682 TGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGAC 10741 | ||| || ||| | | || |||| || ||| || | || | |||||||| | Sbjct 343226 -GCTCGGTCAGCAGGAATATCTGGAGCTGGGCAATCTCGACTCAAAGCGTGACTGGGGCC 343168 Query 10742 ACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAAT 10801 |||| ||||| || ||||| || |||||||| | | || || ||| | |||| || | Sbjct 343167 ACGCGAAGGATTACGTTGAGGCGATGTGGCTGATGATGCAGCAGGAACGGCCGGAAGATT 343108 Query 10802 ATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 ||| | || ||||| || || ||||| || ||||||| || ||| Sbjct 343107 TCGTCATTGCCACGGGTGAAACGCACTCGGTGCGGGAGTTTGTGGAG 343061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613486701190680