Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2011 136 3e-27 seq2452 113 3e-20 seq147 109 4e-19 seq1878 93.3 3e-14 >seq2011 Length=138812 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135 |||| |||||||| || || || || | ||| || || ||||| | || || || || Sbjct 11461 ATTTTCTCACAAATAAACTGTGCGATGCGGTCTCCTTTCTTCACTTCGAAATCCGTCTCC 11520 Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195 || || ||||||||||| || || |||||||| | ||| ||||| |||| ||||| ||| Sbjct 11521 GAGTGGTTGAACAGCACAACGCCGACGTTACCACGGTAGTCCTCGTCGACGACACCGGCA 11580 Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCAT 9255 || || ||||| |||| ||| || || || ||||| ||||| || | || || ||||| Sbjct 11581 CCGACATCGATAAAGTTCTTCACTGCCAGACCAGAACGGGGAGCTACCCGGCCATAGCAG 11640 Query 9256 CCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAG 9293 || |||| | || ||| | | ||||||||| || || Sbjct 11641 CCTTCCGGCACCTGTACCTGGATGTCGGTCATCACGAG 11678 >seq2452 Length=1332465 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || |||||||| || || | ||| Sbjct 203875 AGGCGAAGCACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGA 203934 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||||||||||| |||| |||||| Sbjct 203935 CCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGATCCGGAGGAATTCCCTCC 203994 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 203995 TTATCCTGGATCTTCGCCTTCACATTTTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 204054 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 204055 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 204096 >seq147 Length=443619 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || || || ||||||||||| ||| | ||| Sbjct 111916 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGA 111857 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || |||||||| ||||| | ||||| ||| ||| Sbjct 111856 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCTGGGGGAATGCCTTCC 111797 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 111796 TTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCGAGTGTG 111737 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||| || ||||||||||| Sbjct 111736 ATGGTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 111699 >seq1878 Length=248525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 48582 TGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGT 48641 ||||| |||||||| |||| | ||| | ||||||||||| || |||||||| || | Sbjct 208414 TGAATGTTGTAATCGGATATGATCCGACCATCGTCCAACTGTTTGCCGGCAAAGATGATG 208473 Query 48642 CGCTGTTGATCCGTGGGAACGCCCTC-CTTGTCGCTAATCTTTTGTTTTACAGAACC--C 48698 ||||| ||||| | | || ||| || | || | | ||||||||| | || | Sbjct 208474 CGCTGCTGATCTGGTGCAATGCCTTCGCGGGTTTCGA---TTTTGTTTTTGATGTCCAGC 208530 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 || | || ||||| ||| |||| |||||||| ||||| || | ||||| |||||| Sbjct 208531 ACCGTTTCCGACGCGATCACGTCCAGTGTAATCGTCTTTCCAGTTAGCGTTTTGACAAAA 208590 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 208591 ATCTGCAT 208598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925190124379