Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq642 123 4e-22 seq2 120 5e-21 seq2119 114 2e-19 seq1391 89.7 8e-12 seq502 87.8 3e-11 >seq642 Length=4209 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || || ||||||||| |||||| || || ||| Sbjct 761 TGTACTTGGTGACAGCCTTCGTGCCTTCGGACACGGCGTGCTTGGCCAACTCACCAGGCA 820 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| || ||||| ||||||| |||||| |||||||| | Sbjct 821 ACAGCAGACGGACGGCCGTTTGGATTTCGCGGGACGTGATCGTCGAACGCTTGTTGTAGT 880 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| || |||| ||||||| |||| |||||||| || || ||||| Sbjct 881 GCGCCAAGCGGGATGCTTCGGCAGCGATGCGCTCGAAAATGTCGTTCACGAAGCTGTTCA 940 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| || || || || || || || || || | |||||||| Sbjct 941 TGATGCTCATCGCCTTGGAAGAAATTCCGGTATCCGGATGGACTTGTTTCAACACCTTGT 1000 Query 1485710 A 1485710 | Sbjct 1001 A 1001 >seq2 Length=1335683 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| ||||| || ||||||||| | |||| ||||| ||| Sbjct 268273 TGTACTTTGTCACAGCCTTGGTGCCCTCGGATACGGCGTGCTTAGCCAACTCGCCCGGCA 268332 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || |||||||| ||||||| ||||||| || ||||| | Sbjct 268333 ACAGTAGTCGCACCGCCGTCTGGATTTCGCGGGACGTGATCGTGGACCGTTTGTTGTAGT 268392 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| || || | | || || |||| ||||||||||| || ||||| Sbjct 268393 GTGCCAGCCGGGACGCTTCCGCCGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 268452 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| ||| || || || ||||| || |||||||| | |||||||| Sbjct 268453 TAATGCTCATCGCCTTGGATGAAATACCGGTATCGGGATGGACCTGCTTCAACACCTTGT 268512 Query 1485710 A 1485710 | Sbjct 268513 A 268513 >seq2119 Length=1501809 Score = 114 bits (126), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| |||| ||||| ||| ||| || ||||| ||||| |||||| Sbjct 1235015 CCTTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTGAGTCCAGGCATCAGGCCACGCTTC 1235074 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | | ||| || || ||| ||||| || || ||||||||||| Sbjct 1235075 TTCAGCCAGAAGATTGAAGCGAAGCTTCCACTGAAGAAGATACCTTCAACGGCGGCAAAC 1235134 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | || | ||| || || ||||| |||| |||| | |||||| |||| |||| Sbjct 1235135 GCCACAACCCGTTC-GCCAAAGT----TGGCCTTCTTGCTCGAGATCCAGTTCAGTGCCC 1235189 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG 794568 | || ||||| ||| |||| | |||| ||| ||||||||| ||| ||| Sbjct 1235190 AGTCAGCCTTCTTCTTCACGCACGGCAGCGTTTCGATGGCGTTAAACAGG 1235239 >seq1391 Length=279726 Score = 89.7 bits (98), Expect = 8e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || ||||| | ||| | ||||| | ||| ||||| || ||||| || Sbjct 3087 CTGGTCGACATACCGTGCCGTATTGTTGTACACGCGCAACATCGGCACCAGTCCGTTTGA 3146 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || | | ||| | ||| ||||| | |||| || | ||| Sbjct 3147 AATTCCGTTCGTACCAGATATGTACGTTCCCTTCGCGCGGATGCAGTGCACGTTCAGGCC 3206 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || ||||| | ||||| || || || |||| || ||||| |||||||| ||||| Sbjct 3207 AATACCACCGGCAGATTTGGAAATAAGGGCACACTGCTTGAGCGTATCGTAGATACCCTC 3266 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 ||| ||| | |||| || |||||| || || || Sbjct 3267 GATACTGTCATCGGACATGGTCAGCAGAAAACAGGAAGA 3305 >seq502 Length=388983 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| ||||| ||| ||||||| | ||| |||| ||||| Sbjct 40913 GAAAAGCGCACAGACGATATTAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGT 40972 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || ||| |||| || || || ||||| || ||||| ||| || || || | Sbjct 40973 ACGCTATTCGAGCTGATTCTGGCTGCGAACTATCTGGACATTAAGGGGCTACTAGACGTT 41032 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||||||| ||||| ||| | ||||||||||| | || || || || ||||| || Sbjct 41033 ACGTGCAAGACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 41092 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||| ||| ||| Sbjct 41093 TTCAACATTAAGAACG 41108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915962060798447