Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 107 3e-17 seq1446 102 1e-15 seq642 96.9 5e-14 seq2119 95.1 2e-13 seq1391 87.8 3e-11 >seq2 Length=1335683 Score = 107 bits (118), Expect = 3e-17 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||||||||||| | |||||||| || ||| |||| | ||||| || Sbjct 268520 CTATATCTACAAGGTGTTGAAGCAGGTCCATCCCGATACCGGTATTTCATCC------AA 268467 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | | ||| || |||||| || ||||||||||| |||| || || | | || || Sbjct 268466 GGCGATGAGCATTATGAACAGCTTCGTCAACGACATCTTCGAGCGGATTGCGGCGGAAGC 268407 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 || ||||| | || |||||| || ||||||| | ||||| |||||||| || Sbjct 268406 GTCCCGGCTGGCACACTACAACAAACGGTCCACGATCACGTCCCGCGAAATCCAGACGGC 268347 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | ||| ||||| |||| | ||||||||| ||||||||||||| Sbjct 268346 GGTGCGACTACTGTTGCCGGGCGAGTTGGCTAAGCACGCCGTATCCGAGGGCACCA 268291 >seq1446 Length=1019741 Score = 102 bits (112), Expect = 1e-15 Identities = 205/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 332923 CGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAG 332982 ||||||||||||||| || || || ||||| ||| | ||||||| || ||| || Sbjct 419085 CGTGTTGCAGGCCAGTGCGAAGCGTGTCGTGTTGCTGAAGATTTCCATCGTTCGCCGAAG 419026 Query 332983 GGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCG 333042 || || ||||| || ||| | | ||| ||||||||||| || | ||||||||| || Sbjct 419025 CGCTTGCTGGGCACCCTCCGTCATACTGTCCGCCTCGTCGAGAATTACGATCTTGTGACG 418966 Query 333043 CCCGTGCGGCAGATCAACCCTTT--TCGAGGCGTGGTGTTTGATGATCTTGCGCACGACG 333100 ||| | |||| || ||||| | ||| ||| ||| || | |||| || ||| Sbjct 418965 ACCGCGAGGCA-ATGTTACCTTTAGTTGAGCAAAGGT-TTTAATCTTGCTGCGTACCACG 418908 Query 333101 TCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCC 333160 || | ||||| || | ||| || || ||||| || ||||| ||| || | | || Sbjct 418907 TCAATACCGCGTTCATTCGAAGCATTCAGTTCAAGTACGGCTTCG-CGAAAGTTGGGTCC 418849 Query 333161 AAG-AGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||| || | ||| ||||| || ||| |||| || |||||| || ||||| ||| Sbjct 418848 AAGTAGTATGCGTGCCAGACAGAGTATGGTCGTCGTTTTGCCCACTCCCGGCGGTCCC 418791 >seq642 Length=4209 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | || || || || || ||| || || || |||| | Sbjct 1004 ATCTACAAGGTGTTGAAACAAGTCCATCCGGATACC---GGAATTTCTTC---CAAGGCG 951 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| |||| || Sbjct 950 ATGAGCATCATGAACAGCTTCGTGAACGACATTTTCGAGCGCATCGCTGCCGAAGCATCC 891 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||||| || ||||||||| |||||| | ||||| ||||| || ||||| Sbjct 890 CGCTTGGCGCACTACAACAAGCGTTCGACGATCACGTCCCGCGAAATCCAAACGGCCGTC 831 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| || || |||||| ||||||||| ||||| ||||| Sbjct 830 CGTCTGCTGTTGCCTGGTGAGTTGGCCAAGCACGCCGTGTCCGAAGGCAC 781 >seq2119 Length=1501809 Score = 95.1 bits (104), Expect = 2e-13 Identities = 184/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || || || ||||| | ||||||||||| || | || | | | | Sbjct 1235600 AGGCGGAAGCTTCGTTCTGGACGGTGGAGGAGGTCGATCTGTCCAAGGATATGAAGGATT 1235541 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| |||||| ||| |||||| || || ||| ||||| || ||||| ||| || Sbjct 1235540 GGGATGCGCTGAAAC-CGAGCGAGCGTCACTTTATCTCTCACGTGCTTGCCTTCTTT-GC 1235483 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 || ||||||||||||| ||| || |||| | ||||| | | ||||| || | Sbjct 1235482 TGCGTCCGATGGCATCGTGAACGAAAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 1235423 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || | || ||||| |||||||| || || ||||| | ||| || | Sbjct 1235422 AACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGAT 1235363 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||||| ||||||||||| ||| || Sbjct 1235362 GTACTCGCTGCTGATCGACACGTACATC 1235335 >seq1391 Length=279726 Score = 87.8 bits (96), Expect = 3e-11 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004 ||||| ||| || ||| || || || |||||| || |||| | || ||||| Sbjct 3324 CACGCAGCGGCCCCAGCTGTCTTCCTGTTTTCTGCTGACCATGTCCGATGACAGTATCGA 3265 Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||| ||||| || |||||||||||||| || || || ||||| | ||||| || || || Sbjct 3264 GGGTATCTACGATACGCTCAAGCAGTGTGCCCTTATTTCCAAATCTGCCGGTGGTATTGG 3205 Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124 | || ||| | ||||| ||| | ||| | | || || ||||| || Sbjct 3204 CCTGAACGTGCACTGCATCCGCGCGAAGGGAACGTACATATCTGGTACGAACGGAATTTC 3145 Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| || ||||| ||| | ||||| | ||| | ||||| || || ||||||||| Sbjct 3144 AAACGGACTGGTGCCGATGTTGCGCGTGTACAACAATACGGCACGGTATGTCGACCAG 3087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177553384237026