Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2523 131 2e-25 seq1391 93.3 5e-14 seq1920 89.7 6e-13 >seq2523 Length=22734 Score = 131 bits (144), Expect = 2e-25 Identities = 302/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| || ||||| ||||| | ||||| || || ||||| || | | |||| ||| Sbjct 18427 AACCGGTACCGATACCTTCCGCACCGTTGACCAGCACCATCGGTATGATCGGCAGATACC 18368 Query 178943 AGTCTGGTTCAAT-CGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTC 179001 || | ||||| || |||| | |||||| || || | | || || |||||| | Sbjct 18367 AGACAGGTTCGATGCGCA-GATTGTCATCGACCTGGTACTCTAACAGTGGATCGTCCAGC 18309 Query 179002 GGATCAAAGATTTTACGAG-CATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGA-- 179058 |||| ||||| | || | || | || || |||||||||||||||| | || Sbjct 18308 GGATGGAAGATGTGTCGCGTCAGGGC-GGAAAGCATTGTGAAGATGTACCTAG---GACT 18253 Query 179059 GACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATT 179117 | ||| || ||||| ||| | || ||||| || || ||||||| || | || ||||| Sbjct 18252 GGCGCTGTCCTTGCCGCCCGTCAGGCGCGTACCGAACTGACCACCCGGATACAGCAGATT 18193 Query 179118 GATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGAC 179177 ||| ||||| ||| | ||| | | |||| ||||| ||||| ||| || || Sbjct 18192 GATGTTGTTGCTACCAACGTAATTCTGCGCCAGGTTGACGATCGTGGAGCAGAGCGACAC 18133 Query 179178 TTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCAT 179237 |||||||||||||| || ||||| |||||||| | | |||| ||| |||||||| | Sbjct 18132 CTCACCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCTGCCAGCTGGGCCACCTTTAC 18073 Query 179238 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAG 179297 ||| |||| || | |||||| | ||| ||| || | ||| |||||| || Sbjct 18072 CTCGCGCTTGTCGTCACGCTTGAAGCAGGTGAACAGCACTTTGCGTTGGCCAGGCTTCAG 18013 Query 179298 GCCGTCGGCCATGTGCGCGATGGAACG 179324 || ||| |||| || ||| || || Sbjct 18012 CCCATCGAGCATGCACGGGATCGAGCG 17986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 179954 ACTTCCCACGGAGAGGGAACACACCGTA-GTGATCACGACCAACCACAGAGAGACCAGCA 180012 |||| || || || || ||||||||||| ||| |||||||| |||||| || || | Sbjct 17314 ACTTACCGCGCAGCGGAAACACACCGTACGTG-TCACGACCGACCACACCCAGCCCGGAC 17256 Query 180013 ACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTG 180071 || ||||| || || || || || ||||| || | |||||||||||| || | |||| Sbjct 17255 ACGGCGAGCGTTTTGGCTGAGTCTCCCTCGGTAAGGATGAGCGTACAGTTGAGCGAATTG 17196 Query 180072 TGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 180128 | || || || | ||| ||||| |||| |||||| ||||| | || |||||||| Sbjct 17195 CG-CGAACCGGCATCGTTGGCGTCCTCCAGCTTGGGGATACCCTTGATCTTGGACTT 17140 >seq1391 Length=279726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || || || || || ||||| ||||| | | || ||||| | |||||| | ||| Sbjct 2599 AGCGCAATCGAGGCTAGATTGCACACCGCTATTTCGTCCTTGGACGAGTACTCCACAATC 2658 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||||| ||| |||| ||| |||||||| | ||||| ||||| ||| ||| Sbjct 2659 TCGGTGCACAGGTTGGAACACTTGATGGTGCCAATGTTCTGCTGATTGCTCTTACGATTA 2718 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 |||||||||||||| |||||||| || ||||| || || |||| || ||||| Sbjct 2719 CACGCATCCTTGTACAGCATGTACGGTACACCCGTTTCAACCTGCGACTCGATGATAGC 2777 >seq1920 Length=889085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 193/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 || || || ||| | || | | | || || ||| ||| || || ||||| ||||||||| Sbjct 343345 AACTATCGTGAAGCGTACGATATGTTCGCCTGCAATGGCATCCTGTTCAATCACGAGTCA 343286 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT--GGTATCAAACAAATCG 12042 || || || || | |||| ||||| || |||||| | ||| |||| | || Sbjct 343285 CCGCGCCGCGGGGAGAATTTTGTGACGCGCAAAATCACCCGTTCGGTGGCAAAGATTTC- 343227 Query 12043 TGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGAC 12102 | ||| || ||| | | || |||| || ||| || | || | |||||||| | Sbjct 343226 -GCTCGGTCAGCAGGAATATCTGGAGCTGGGCAATCTCGACTCAAAGCGTGACTGGGGCC 343168 Query 12103 ATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAAT 12162 | || ||||| || ||||| || |||||||| | | || || ||| | |||| || | Sbjct 343167 ACGCGAAGGATTACGTTGAGGCGATGTGGCTGATGATGCAGCAGGAACGGCCGGAAGATT 343108 Query 12163 ATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 ||| | || ||||| || || ||||| || ||||||| || ||| Sbjct 343107 TCGTCATTGCCACGGGTGAAACGCACTCGGTGCGGGAGTTTGTGGAG 343061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618414536533880