Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1669 185 8e-42 seq147 129 5e-25 seq2452 125 6e-24 seq1878 113 4e-20 seq890 87.8 2e-12 >seq1669 Length=235595 Score = 185 bits (204), Expect = 8e-42 Identities = 222/302 (74%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||||||| |||||||| |||| || | |||| | | || ||||| ||||| Sbjct 204916 ACGCATGACGATCTGTGGAACTCGGCGCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAT 204857 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || || |||| ||||||||||| ||||||||| |||| ||| | | |||| | || Sbjct 204856 GGCTTCCTGCGGATGTATTGGGCGAAAAAGATACTGGAGTGGACGAAAACGCCCGAGGAA 204797 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| | || || | | |||| ||| || || | ||||| |||||| |||| Sbjct 204796 GCGCTTGAGACGGCGATCTATCTTAACGATCGGTATAGCCTGGATGGGCGCGATCCAAAC 204737 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| ||||| |||||||| || |||| | |||||||| || |||||||||||| Sbjct 204736 GGGTACGTCGGTTGCATGTGGTCGATCGCCGGTATTCACGATCAGGGTTGGAAGGAGCGC 204677 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 || | |||||||| ||||| || ||||||||||| || |||| | ||||| ||||| Sbjct 204676 GAAATCTTTGGCAAAATTCGATACATGAACTATGAAGGATGTAAGCGTAAATTCAATGTG 204617 Query 135761 AA 135762 || Sbjct 204616 AA 204615 >seq147 Length=443619 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||||| || |||||| | || || || || || || || || Sbjct 111698 CATGCAGATTTTCGTGAAAACTCTTACTGGCAAGACCATCACACTCGAGGTCGAGCCTTC 111757 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || || || ||||| |||||||| || || ||||| Sbjct 111758 GGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 111817 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| || || || | || |||||||| Sbjct 111818 GCAGCGACTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCTGATTACAA 111877 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| || ||||| |||||| | ||| |||| |||| Sbjct 111878 CATCCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 111913 >seq2452 Length=1332465 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 204092 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 204033 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || || || || || || |||||| Sbjct 204032 GATACGATCGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATTCCTCCGGATCAA 203973 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || |||| || || || | |||||||||||| Sbjct 203972 CAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACGCTGTCCGATTACAAC 203913 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | |||||||| | || |||| ||||| Sbjct 203912 ATCCAGAAGGAGTCGACCCTTCATTTGGTGCTTCGCCTGCGCGGTGG 203866 >seq1878 Length=248525 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 |||||||||||| ||||| ||||| || || || ||| | ||||| || || ||| | Sbjct 208602 CGCCATGCAGATTTTTGTCAAAACGCTAACTGGAAAGACGATTACACTGGACGTGATCGC 208543 Query 27044 GTCCGACTCGATTGAGATGG---TCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 ||| || || | | ||| ||||| | ||||| || | |||||||| |||| Sbjct 208542 GTCGGAAACGGT---GCTGGACATCAAAAACAAAATCGAAACCCGCGAAGGCATTGCACC 208486 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 ||||| ||||| | || | ||||||||||| ||||| || || || | | ||||| Sbjct 208485 AGATCAGCAGCGCATCATCTTTGCCGGCAAACAGTTGGACGATGGTCGGATCATATCCGA 208426 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| | | ||||| | ||| |||| |||| ||| |||||| || Sbjct 208425 TTACAACATTCAGCATGGATCGACAATGCATCTGGTGCTGCGATTGAAGGGTGGTAT 208369 >seq890 Length=1089215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || || || ||||| || Sbjct 223692 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTCGAACCATCG 223751 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 || ||||||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 223752 GATACGATTGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACC 223804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434903868288960