Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq19 100 6e-16 seq3 93.3 9e-14 seq18 91.5 3e-13 seq15 91.5 3e-13 seq5 91.5 3e-13 seq4 91.5 3e-13 seq2 91.5 3e-13 seq7 89.7 1e-12 seq1 89.7 1e-12 >seq19 Length=1744624 Score = 100 bits (110), Expect = 6e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 281740 TCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACT 281799 |||||||||| ||||| | || ||| || ||||| ||| || || || ||||||| Sbjct 912344 TCGTGAAGATGTACCTCGGGCTGGCGCTATCCTTACCGCCCGTCAACCGCGTACCAAACT 912285 Query 281800 GACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 |||| |||| ||| | ||| ||||| ||||| |||||||| | ||| |||||||||| Sbjct 912284 GACCGCCCGGGTACAGCAGGTTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGA 912225 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 ||| ||| ||||| ||| ||||| || || ||| ||| || || ||| Sbjct 912224 TGATCGTCGAACAGAGCGACTGCTCGCCGTGATGGTACGCGGACATTTCCGCCACCGAAC 912165 Query 281920 CACTGAACTGTGCTACCTTCACGTC 281944 | ||||| || |||||||| || Sbjct 912164 CTGCCAACTGGGCCACCTTCACCTC 912140 >seq3 Length=16089237 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 15381546 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 15381605 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 15381606 GAGCCCCACGTTGGGC 15381621 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 4061336 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4061277 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4061276 CCCCACGTTGGGC 4061264 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 4530109 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4530050 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4530049 CCCACGTTGGGC 4530038 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 4532021 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4532080 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4532081 CCCACGTTGGGC 4532092 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 4544768 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4544709 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4544708 CCCACGTTGGGC 4544697 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 4569127 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4569186 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4569187 CCCACGTTGGGC 4569198 >seq18 Length=1856345 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1571803 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1571862 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1571863 CCCCACGTTGGGC 1571875 >seq15 Length=2584459 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1141555 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1141496 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1141495 CCCCACGTTGGGC 1141483 >seq5 Length=12895223 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2280537 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2280478 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2280477 CCCCACGTTGGGC 2280465 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3597563 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3597622 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3597623 CCCACGTTGGGC 3597634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3647837 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3647778 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 3647777 CCCACGTTGG 3647768 >seq4 Length=15719670 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 5323441 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5323500 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 5323501 CCCCACGTTGGGC 5323513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 5319406 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5319347 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5319346 CCCACGTTGGGC 5319335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 8053241 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8053300 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8053301 CCCACGTTGGGC 8053312 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 11777699 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11777758 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11777759 CCCACGTTGGGC 11777770 >seq2 Length=22738934 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 8126621 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8126562 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 8126561 CCCCACGTTGGGC 8126549 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 17548636 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 17548577 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 17548576 CCCCACGTTGGGC 17548564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 246/375 (66%), Gaps = 2/375 (1%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || ||||| ||||| || || |||| || || | |||| ||| Sbjct 20260898 CAAGCGTCCACGTCCGAACTCTATGGCAAGGTGGTCGAAACGCCGCAGAACGAAAAAACT 20260839 Query 61149 CCGTTTTATCCTCGTAGCCCGTATG-GTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || || ||||| || ||||| | |||| || ||| | |||| |||||||| | Sbjct 20260838 CCATTCTATCCGCGATCGCCGTACGCGTGT-GCGAAAATGTACGGCTACTGGATAGTGAT 20260780 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 ||||| |||||| |||| ||||||| || ||| ||| || || |||||| Sbjct 20260779 CAATTATCGCGAGGCGTACAACATGTTTGCTTGCAACGGTATTCTCTTTAACCACGAGTC 20260720 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTT 61327 ||| ||||| | | |||||||| |||||||| || |||| || || |||| Sbjct 20260719 GCCCCGGCGAGGTGAGAACTTTGTGACGCGTAAAATCACTCGCTCGGTGGCGAAGATTTC 20260660 Query 61328 TAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATA 61387 ||| | | ||| | | || || || | || || || | || ||||| | Sbjct 20260659 GCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGCGTGACTGGGGCCA 20260600 Query 61388 TGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTA 61447 || |||| || |||| || |||||||||||| |||| || | || || || | Sbjct 20260599 CGCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGCAGAAGCAGCCGGAAGATTT 20260540 Query 61448 CGTTATTGCGACTGG 61462 ||| |||||||| || Sbjct 20260539 CGTCATTGCGACGGG 20260525 >seq7 Length=7675037 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 5458043 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5458102 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5458103 CCCACGTTGGGC 5458114 >seq1 Length=30017264 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 17030206 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 17030147 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17030146 CCCACGTTGGGC 17030135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819798455300