Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 196 5e-45 >seq2 Length=22738934 Score = 196 bits (216), Expect = 5e-45 Identities = 402/595 (68%), Gaps = 2/595 (0%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA-TAAGACGTA 16856 |||||| || || || || || || |||| | |||||||||||| || | | | || | Sbjct 19671868 ATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGCATGTCG-A 19671926 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 |||| || || | ||||| || ||||| || || ||||| || || || | Sbjct 19671927 CCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGATGATCTCCG 19671986 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 || || |||| |||||| | || |||| |||||||| || || || || | Sbjct 19671987 TCACGCGCTCCTTCGACGGTTTCTGCACCAGATACCGGAACATCAGGCAGGCAAAGTCAC 19672046 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 | || | ||||||||| | ||| || ||||| || || |||| ||| ||||| | Sbjct 19672047 AGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCCGGCATTAGGC 19672106 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | || ||||| | ||| || || || || || ||| |||||| || |||||||| | Sbjct 19672107 CGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGATGCCCTCGACTG 19672166 Query 17097 ATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA 17156 || ||||| | | || || | | | || | ||| | ||||| ||| || Sbjct 19672167 CAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTCTTGCTGGAGATCCAGTTCAGCG 19672226 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTT 17216 |||| ||||| || | ||||| ||| || |||||| || || || || | | ||| Sbjct 19672227 CCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCC 19672286 Query 17217 TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGT 17276 |||| ||||| ||| ||||| ||||| || || |||||||||| ||| | || Sbjct 19672287 GCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTGTGCACGT 19672346 Query 17277 TCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGT 17336 ||||||| || |||||||| ||||| ||||| ||||| |||| | || || ||| | Sbjct 19672347 TCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTGGC 19672406 Query 17337 AGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||| || ||| | ||||| || || ||||| ||||| |||||||| || || Sbjct 19672407 TGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGAAGAAGGC 19672461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543594510800