Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq5 95.1 1e-14 >seq2 Length=22738934 Score = 154 bits (170), Expect = 2e-32 Identities = 459/703 (65%), Gaps = 4/703 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA-GTCGTA 16094 ||| || || || || || || || |||| | ||||| || || || | | |||| | Sbjct 19671868 ATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGCATGTCG-A 19671926 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 |||| || || || || | || | || || ||||| ||||| || ||||| || | Sbjct 19671927 CCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGATGATCTCCG 19671986 Query 16155 TGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | || | ||| |||||| | || || | ||||| || || || ||||| Sbjct 19671987 TCACGCGCTCCTTC-GACGGTTTCTGCACCAGATACCGGAACATCAGGCAGGCAAAGTCA 19672045 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || || ||||| ||||| | ||| || ||||| || || || | ||| |||||| Sbjct 19672046 CAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCCGGCATTAGG 19672105 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || || ||||| | |||||| || || ||||| || |||||| || ||||| || Sbjct 19672106 CCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGATGCCCTCGACT 19672165 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | || || || | | || ||| | | | || | || | ||||| ||| | Sbjct 19672166 GCAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTCTTGCTGGAGATCCAGTTCAGC 19672225 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCT 16453 |||| ||||| || | |||| || || |||||| || || || |||| | ||| Sbjct 19672226 GCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCC 19672285 Query 16454 TTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATG 16513 |||| ||| ||| ||||| || ||||| | ||||||||| ||| | | Sbjct 19672286 CGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTGTGCACG 19672345 Query 16514 TTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACG 16573 ||||| || || |||||||| || |||||||| || ||||||| | || || ||| | Sbjct 19672346 TTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTGG 19672405 Query 16574 TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAAT 16633 || || ||| |||| |||||||| ||||||||||| || || || || || | Sbjct 19672406 CTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGAAGAAGGCAAGC 19672465 Query 16634 ATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTG 16693 | |||| ||||||| ||| | | | || | ||| ||||| | || || Sbjct 19672466 ACGTGCGAGATGAAATGACGCTCGCTTGGTTTGAGCGATTCCCAGTCTTTCATGTCCTTC 19672525 Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 || | ||||| ||||| |||||| ||| |||| | |||| Sbjct 19672526 GACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTCCGCCT 19672568 >seq5 Length=12895223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTG 118988 ||| | |||||||| || || || ||||| | |||||||||||| | ||| || || Sbjct 6100995 TCGTAGTTCATGTAGCGAATTTTGCCAAAAATTTCCCGCTCCTTCCAT-CCCTGATCATG 6100937 Query 118989 GAGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTC 119048 || || || | | ||| | || || |||||||| || ||||| || || | Sbjct 6100936 GATGCCGGCGATCGACCACATGCACCCGACGTATCCATTCGGATCGCGCCCATCCAGGCT 6100877 Query 119049 GTACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCAT 119106 ||| |||||| | ||||| | || || || ||| || || || || |||| Sbjct 6100876 GTAGCGATCGTTGAGATAGAT--GGCCGTTTCGAGCGCTTCCTCGGGCGTTTTCGTCCAC 6100819 Query 119107 TCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATC 119166 || |||||||| || ||||| ||||| || | | |||||||||| || |||| || | | Sbjct 6100818 TCTAGTATTTTCTTCGCCCAATACATGCGCAGAAACCCGTGCATCTTGGCCTCCTTCACC 6100759 Query 119167 ATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGC 119210 | ||| || || || | |||||| || |||||| || |||| Sbjct 6100758 AGCTGCAGCTGGGCCGCGTTCCACAGGTCATCGTGGGTGTGGGC 6100715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412418269200