Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 1e-20
seq1 114 1e-20
seq9 100 2e-16
seq2 98.7 8e-16
>seq4
Length=15719670
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||||||| ||| | || |||||||| || || || || || | |
Sbjct 4750556 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4750615
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||| ||||| || | || || | |||||| ||| ||
Sbjct 4750616 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4750675
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||||| ||||| | ||| ||||| ||||||
Sbjct 4750676 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4750735
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
|| | |||||||||||| || || | |||||||| || || ||||| |||||
Sbjct 4750736 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 4750788
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
|| || || || || | |||||||| || | ||||| ||||| || ||||| ||||||
Sbjct 15451528 TTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC 15451469
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| ||| || || | ||||||||||| ||||| || | || || | |||||| |||
Sbjct 15451468 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGA 15451409
Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125
|| | ||||||||||| |||||| ||||| | ||| || || ||||||
Sbjct 15451408 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 15451349
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|| | || ||||| |||||||| | ||||| || || || ||||| ||
Sbjct 15451348 ACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 15451296
>seq1
Length=30017264
Score = 114 bits (126), Expect = 1e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || || || ||||| | |
Sbjct 15159550 CCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 15159609
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | || |||||||| || || || | || || | |||||| ||| ||
Sbjct 15159610 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15159669
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || ||||| ||||| | ||| || || ||||||
Sbjct 15159670 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACC 15159729
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184
|||| || |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 15159730 TCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTGAAGCT 15159785
>seq9
Length=6651167
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||| |||| ||||| || |||||||| || ||||| ||||| | |
Sbjct 534984 CCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 535043
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | ||||||||||||| ||||| || | || || | |||||| || ||
Sbjct 535044 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 535103
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || || ||||| |||||| || || | ||| ||||| |||||
Sbjct 535104 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGACC 535163
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||| || ||||||||||| || | ||| || || || || ||||||
Sbjct 535164 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 535211
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
|||||| || || |||| || |||| || | || |||||||| || ||||| |||||
Sbjct 534577 GTTTCCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 534636
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
| ||| || | ||||||||||||| ||||| || | || || | |||||| ||
Sbjct 534637 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 534696
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
|| | || |||||||| |||||| || || | ||| ||||| |||||
Sbjct 534697 CGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTC 534756
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || ||||||||||| || | ||| || || || || |||||
Sbjct 534757 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807
>seq2
Length=22738934
Score = 98.7 bits (108), Expect = 8e-16
Identities = 120/163 (74%), Gaps = 8/163 (5%)
Strand=Plus/Plus
Query 29051 AAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGC 29110
|| ||||||||||| | ||| ||| || | |||| | ||||||| |||||| |||
Sbjct 17776115 AACTCGCGGCCCTTCATCAGCTGCAGATAGTGGCAGTTGCTGTACCAGATGGCGTGCTGC 17776174
Query 29111 TGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCAC--- 29167
| ||||||| | ||||| | ||||| |||||||| || ||| |||||| |||||||
Sbjct 17776175 TCCCACGGCTCATCGTCCTGCTCCCAGTCCTTCAGCCCACCGCCGCAGCTAAAGCACTTG 17776234
Query 29168 -CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCG 29209
|||| ||||| || || ||||| || || ||||| |||
Sbjct 17776235 ACGCG----GTCGCTCTTTCCGGTGTAGAAAAAGCCGGCATCG 17776273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422257604651960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |