Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq1 114 1e-20 seq9 100 2e-16 seq2 98.7 8e-16 >seq4 Length=15719670 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || |||||||| || || || || || | | Sbjct 4750556 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4750615 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| ||| || Sbjct 4750616 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4750675 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||||| ||||| | ||| ||||| |||||| Sbjct 4750676 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4750735 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | |||||||||||| || || | |||||||| || || ||||| ||||| Sbjct 4750736 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 4750788 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | |||||||| || | ||||| ||||| || ||||| |||||| Sbjct 15451528 TTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC 15451469 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| || || | ||||||||||| ||||| || | || || | |||||| ||| Sbjct 15451468 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGA 15451409 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| |||||| ||||| | ||| || || |||||| Sbjct 15451408 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 15451349 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||| |||||||| | ||||| || || || ||||| || Sbjct 15451348 ACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 15451296 >seq1 Length=30017264 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || || || ||||| | | Sbjct 15159550 CCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 15159609 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| || || || | || || | |||||| ||| || Sbjct 15159610 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15159669 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || ||||| ||||| | ||| || || |||||| Sbjct 15159670 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACC 15159729 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 |||| || |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 15159730 TCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTGAAGCT 15159785 >seq9 Length=6651167 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||| |||| ||||| || |||||||| || ||||| ||||| | | Sbjct 534984 CCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 535043 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||| || || Sbjct 535044 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 535103 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| || || | ||| ||||| ||||| Sbjct 535104 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGACC 535163 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||||||||| || | ||| || || || || |||||| Sbjct 535164 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 535211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || |||| || |||| || | || |||||||| || ||||| ||||| Sbjct 534577 GTTTCCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 534636 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||| || | ||||||||||||| ||||| || | || || | |||||| || Sbjct 534637 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 534696 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 534697 CGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTC 534756 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | ||| || || || || ||||| Sbjct 534757 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 >seq2 Length=22738934 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 29051 AAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGC 29110 || ||||||||||| | ||| ||| || | |||| | ||||||| |||||| ||| Sbjct 17776115 AACTCGCGGCCCTTCATCAGCTGCAGATAGTGGCAGTTGCTGTACCAGATGGCGTGCTGC 17776174 Query 29111 TGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCAC--- 29167 | ||||||| | ||||| | ||||| |||||||| || ||| |||||| ||||||| Sbjct 17776175 TCCCACGGCTCATCGTCCTGCTCCCAGTCCTTCAGCCCACCGCCGCAGCTAAAGCACTTG 17776234 Query 29168 -CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCG 29209 |||| ||||| || || ||||| || || ||||| ||| Sbjct 17776235 ACGCG----GTCGCTCTTTCCGGTGTAGAAAAAGCCGGCATCG 17776273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257604651960