Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 558 4e-154 seq4 136 4e-27 seq9 134 1e-26 seq1 118 1e-21 >seq2 Length=22738934 Score = 558 bits (618), Expect = 4e-154 Identities = 560/722 (78%), Gaps = 4/722 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || |||||||| || || |||||||||||||| ||||||| || |||| Sbjct 19672568 AGGCGGAGGCTTCCTTCTGGACGGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 19672509 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | | |||||| ||||||||| ||||||||| ||||| |||||| Sbjct 19672508 GGGAATCGCTCAAACCA-AGCGAGCGTCATTTCATCTCGCACGTGCTTGCCTTCTTCGCC 19672450 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||||| ||||| || ||||||||||| ||||| ||| ||||||||||||||| Sbjct 19672449 GCCTCGGACGGTATCGTAAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTG 19672390 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| |||||||| || ||||||||||||||| |||||| Sbjct 19672389 ACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAAATG 19672330 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || ||| || |||||||||||| | ||| || ||||| | | |||| ||| Sbjct 19672329 TACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGAGTATCTGTTCAAC 19672270 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || ||||| ||| |||||||||| || |||||||||| ||||||||| ||||||| || Sbjct 19672269 GCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCC 19672210 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 ||| ||||| ||| || ||||| |||| || ||||| || ||||||||| ||||| Sbjct 19672209 AGCAAGAAGGCCAACTTTGGGGAGCGTGTGGTTGCGTTCGCTGCAGTCGAGGGCATCTTC 19672150 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 ||| ||||| || || ||||| || ||||| ||||| |||||||| ||||| || ||| Sbjct 19672149 TTTAGTGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTG 19672090 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| |||||||| ||||| | |||||||| ||||| || ||||||||||| || Sbjct 19672089 ACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTGCCTG 19672030 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 ||||| | || |||||||| |||| || |||||| | ||||||| || ||| Sbjct 19672029 ATGTTCCGGTATCTGGTGCAGAAACCGTCGAAGGAGCGCGTGACGGAGATCATCCGCGAT 19671970 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGACT 117312 ||||||| ||||||||| ||||| || | || |||||||| || | |||| || | Sbjct 19671969 GCGGTCGTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT-CGACATGCTCGGCAT 19671911 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || |||||| ||||||||| ||||| |||||||| || || || ||||||| ||||| Sbjct 19671910 GAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCGGATCGGTTGCTGCTGGAGCT 19671851 Query 117373 GG 117374 || Sbjct 19671850 GG 19671849 >seq4 Length=15719670 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 4750785 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4750726 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| ||| || | ||||| ||||| ||||| |||| Sbjct 4750725 TCGGATACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 4750666 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||| |||||||| || | ||||| || ||| ||| Sbjct 4750665 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 4750606 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||| | || || ||||| ||| | ||| || | || || Sbjct 4750605 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4750556 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| |||||||||||||| | || ||||| Sbjct 15451294 GAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGC 15451353 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | |||| | ||| | |||| || || | ||||| || || ||||| ||| Sbjct 15451354 CCTCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGG 15451413 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| || |||| Sbjct 15451414 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACT 15451473 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||| |||| || || || ||| Sbjct 15451474 ACAACATCCAGAAGGAATCCACCCTTCACCTGGTG 15451508 >seq9 Length=6651167 Score = 134 bits (148), Expect = 1e-26 Identities = 158/208 (76%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| |||||||| | || ||||| |||| Sbjct 535211 AATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCAT 535153 Query 40749 CG---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || || | || | |||| |||||| || || | ||||||||||| ||||| | | Sbjct 535152 CGGATACGATCGAG--AACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAG 535096 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| |||| ||||| || ||||| Sbjct 535095 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACT 535036 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||||| | || |||| Sbjct 535035 ACAACATCCAGAAGGAGTCGACCTTGCA 535008 Score = 123 bits (136), Expect = 3e-23 Identities = 155/207 (75%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| ||| | Sbjct 534807 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCGTC 534749 Query 40750 G---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | || | |||| |||||| || || | ||||| ||||| ||||| | || Sbjct 534748 GGATACGATCGAG--AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGA 534692 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || |||||| Sbjct 534691 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTA 534632 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 534631 CAACATCCAGAAGGAGTCGACCCTCCA 534605 >seq1 Length=30017264 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || || || |||||||| | || || || ||| Sbjct 15159779 AACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGA-GCC 15159721 Query 40747 ACCG-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || ||| | | | |||| | |||| || |||| || || || |||||||| ||| Sbjct 15159720 ATCGGACACCATCGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGG 15159662 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | || ||||| |||| Sbjct 15159661 ATCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACT 15159602 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| |||||||||||| |||| || || || ||| | || || | || ||| Sbjct 15159601 ACAATATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGCGTGGAGGC 15159549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217203525600