Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq9 113 4e-20 seq4 93.3 3e-14 seq2 87.8 1e-12 >seq1 Length=30017264 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| || |||||||| ||| || | || ||| Sbjct 15159568 ACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCC 15159627 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| || || ||||| | || ||||| ||| | Sbjct 15159628 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGA 15159687 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||||||||||| || || ||||| Sbjct 15159688 ATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTT 15159747 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||||| || ||||||||||||||| Sbjct 15159748 CCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 15159780 >seq9 Length=6651167 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 534599 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 534658 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || || || | |||||||||||| Sbjct 534659 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 534718 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||||| || || |||||| Sbjct 534719 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTG 534778 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| || || |||||| Sbjct 534779 CCAGTCAGCGTCTTCACGAAAATCTGCATG 534808 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 535002 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 535061 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || || || | ||||| |||||| Sbjct 535062 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCTTTGTCCTGG 535121 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||||| || || |||||| Sbjct 535122 ATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTG 535181 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 535182 CCAGTCAGCGTCTTCACGAAGATCTGCAT 535210 >seq4 Length=15719670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| ||| ||| ||| | || ||||| || || |||||||| Sbjct 4750591 CTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 4750650 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | ||||||||||||| || ||| ||| || Sbjct 4750651 GATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTTTGCCTTCACATT 4750710 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||| ||| ||||| | |||||| ||||| ||||| || || || || Sbjct 4750711 CTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGAC 4750770 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 4750771 GAAGATCTGCATCTTG 4750786 >seq2 Length=22738934 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 13530 GTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTA 13589 |||| ||| |||||||||||||||||||||||| | || || | ||||||| Sbjct 17771495 GTGGCGGATGCGAAACTGTGCAAGATATGCTACGCCAACCCGTACAACACCACCTTCGTA 17771436 Query 13590 CCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATG 13649 |||||||| |||||||| || ||||||||||| || | | || ||| |||||| || Sbjct 17771435 CCGTGCGGACACGTGGTAGCCTGTGCCAAGTGCGCTTCGGCGGTGGATCGGTGTCCACTG 17771376 Query 13650 TGT 13652 ||| Sbjct 17771375 TGT 17771373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073707356510