Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq12 120 6e-22 seq2 86.0 1e-11 >seq12 Length=3202847 Score = 120 bits (132), Expect = 6e-22 Identities = 226/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || |||||||| || || ||||| || |||||||| || ||||| || |||| | || Sbjct 246943 GGTGATTTGGGGCCTGTGTACGGGTTTCAATGGCGACACTTTGGAGCAAAATACAAAACG 246884 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || | |||||| ||||| | || || || ||| | || | || | | | | Sbjct 246883 TGCCATGACGATTACACTGGGCAAGGCATGGACCAACTTGCAGAGGTAATCGACAAGATT 246824 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | | || || | ||| | | || || |||| || |||||||| ||| | | Sbjct 246823 AAAAACAACCCGTACGATCGTCGAATCATCATGAGCGCCTGGAATCCGTCCGATATCCCT 246764 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATT 35634 |||||||||||| || ||||| || | |||||||||| ||| | ||| |||||||| Sbjct 246763 AATATGGCTCTTCCACCTTGCCA-TTGCTTGGCTCAATTTTTTGTTGATAACGGAGAATT 246705 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||||| ||||||| ||| | ||||| || ||||| || || ||||| || || Sbjct 246704 ATCATGCCAGATGTATCAACGATCGGCCGATGTGGGCTTGGGTGTACCATTCAACATCGC 246645 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGC 35724 | ||||| | || || ||| |||| || Sbjct 246644 AAGCTACTCGTTGCTTACCCATATGATCGC 246615 >seq2 Length=22738934 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACG---ATTTGGCGGAA 101911 |||||||||| | ||||| | || ||||| ||||| || | | || | ||| Sbjct 19672245 AAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCCAGCAAGAAGGCCAACTTTGGGGAG 19672186 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 | | ||||| || |||||||| || || |||||||||||||| || || |||| Sbjct 19672185 CGTGTGGTTGCGTTCGCTGCAGTCGAGGGCATCTTCTTTAGTGGCAGCTTTGCGGCCATC 19672126 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 |||||| | ||||| | || | |||| || || || | ||| || ||| | || || Sbjct 19672125 TTCTGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTGACGTTCTCGAACGAGCTGATCTCG 19672066 Query 102032 AGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 | ||||| || || || | |||||||| ||| || |||| Sbjct 19672065 CGCGACGAGGGACTGCACTGTGACTTTGCCTGCCTGATGTT 19672025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580069496050