Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 seq2 84.2 2e-11 >seq1 Length=30017264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || || |||||||||| |||||||| ||||| |||||||| || Sbjct 15159622 TCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTA 15159681 Query 139670 TCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||| | ||||||||||| | || | Sbjct 15159682 TCC-TGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGAT 15159740 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||||| || || ||||| |||||||| Sbjct 15159741 GGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 15159776 >seq2 Length=22738934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| || ||||| |||| |||||| | | | || |||| |||| || ||| Sbjct 19672242 AAGAAGGCCGACTGGGCGCTGAACTGGATCTCCAGCAAGAAGGCCAACTTTGGGGAGCGT 19672183 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 |||| ||||| ||| ||| || || | || ||| || || |||||||| || || Sbjct 19672182 GTGGTTGCGTTCGCTGCAGTCGAGGGCATCTTCTTTAGTGGCAGCTTTGCGGCCATCTTC 19672123 Query 52684 TACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGC 52743 | | || | ||| ||||||| || || ||||| |||||| |||| |||||| Sbjct 19672122 TGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTGACGTTCTCGAACGAGCTGATCTCGCGC 19672063 Query 52744 GACGAAGGAATGCACACAGATTTTGCGTG 52772 ||||| ||| ||||| || ||||| || Sbjct 19672062 GACGAGGGACTGCACTGTGACTTTGCCTG 19672034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062077752000