Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 7e-22
seq13 113 1e-19
seq5 95.1 3e-14
>seq1
Length=30017264
Score = 120 bits (132), Expect = 7e-22
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| ||||| ||||| || || || | || ||||| || || |||||
Sbjct 15159580 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCG 15159639
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| ||||| || ||||| |||||||||||||| || ||
Sbjct 15159640 GCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTC 15159699
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || || || ||||| || || || ||||| || || || ||
Sbjct 15159700 ACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTC 15159759
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || || ||||| |||
Sbjct 15159760 TTGACGAAGATTTGCATGTTG 15159780
>seq13
Length=3111553
Score = 113 bits (124), Expect = 1e-19
Identities = 181/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154
|||||| ||||||||||| | ||| | || | |||||| || |||||||||||
Sbjct 204684 ACCGATCAGGATGAATGGTCATCCTGGCAGAAGCGAGGCGATCCGGTCCTACATATAGAG 204743
Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214
|| | | |||||| ||| || | ||||||| || | || ||||| ||||||||
Sbjct 204744 CTCGGCAAATGGGCCGATCTGCTCGTGATAGCCCCGCTCGATGCGAACAGCCTAGCGAAG 204803
Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAAT 165274
|| || ||||| | || |||| ||| | ||||| | || ||| ||
Sbjct 204804 ATGGCGAACGGGCTGTGCGATAATTTGCTGCTGTGTACGACCCGTGCCTGGGATCCAGCC 204863
Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334
|||||| | || ||||||||||| ||||| || | |||||| | ||||| || || |||
Sbjct 204864 AAACCTCTGCTCTTCTGTCCAGCGATGAACACGCGCATGTGGCAGCATCCAATCACCGAG 204923
Query 165335 CAGCATATAGAAACTCTTAA 165354
| ||| || ||||| |||||
Sbjct 204924 CGGCAGATCGAAACGCTTAA 204943
>seq5
Length=12895223
Score = 95.1 bits (104), Expect = 3e-14
Identities = 222/330 (67%), Gaps = 4/330 (1%)
Strand=Plus/Plus
Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617
|| |||| || | ||| | || |||||| ||| ||||| | |||||| | || |||
Sbjct 6100701 AAGAGCTGGAAACTGCCCACACCCACGATGACCTGTGGAACGCGGCCCAGCTGCAGCTGG 6100760
Query 238618 TAAGACTAGGCAAA-ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676
| | | |||| || ||||| | || | || ||||||||||| || || ||||| ||
Sbjct 6100761 TGA-AGGAGGCCAAGATGCACGGGTTTCTGCGCATGTATTGGGCGAAGAAAATACTAGAG 6100819
Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGA 238735
||||| | | | || ||||||| | | || | | || ||||| |||||| |||
Sbjct 6100820 TGGACGAAAACGCCCGAGGAAGCGC-TCGAAACGGCCATCTATCTCAACGATCGCTACAG 6100878
Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795
|| || || ||||| || |||||||| || || |||||||| || || | ||
Sbjct 6100879 CCTGGATGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCA 6100938
Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855
||| || |||| ||| | || ||||| ||| || | |||||||| || || ||
Sbjct 6100939 TGATCAGGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGG 6100998
Query 238856 AACTAAGAAAAAATTTGATGTAAATGCTTT 238885
||| ||| ||||| || || || ||
Sbjct 6100999 CTGCAAGCGAAAGTTTGACGTGAACGCGTT 6101028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151393826789480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |