Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 120 7e-22 seq13 113 1e-19 seq5 95.1 3e-14 >seq1 Length=30017264 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || || || | || ||||| || || ||||| Sbjct 15159580 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCG 15159639 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || ||||| |||||||||||||| || || Sbjct 15159640 GCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTC 15159699 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || ||||| || || || || Sbjct 15159700 ACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTC 15159759 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||| ||| Sbjct 15159760 TTGACGAAGATTTGCATGTTG 15159780 >seq13 Length=3111553 Score = 113 bits (124), Expect = 1e-19 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154 |||||| ||||||||||| | ||| | || | |||||| || ||||||||||| Sbjct 204684 ACCGATCAGGATGAATGGTCATCCTGGCAGAAGCGAGGCGATCCGGTCCTACATATAGAG 204743 Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214 || | | |||||| ||| || | ||||||| || | || ||||| |||||||| Sbjct 204744 CTCGGCAAATGGGCCGATCTGCTCGTGATAGCCCCGCTCGATGCGAACAGCCTAGCGAAG 204803 Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAAT 165274 || || ||||| | || |||| ||| | ||||| | || ||| || Sbjct 204804 ATGGCGAACGGGCTGTGCGATAATTTGCTGCTGTGTACGACCCGTGCCTGGGATCCAGCC 204863 Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334 |||||| | || ||||||||||| ||||| || | |||||| | ||||| || || ||| Sbjct 204864 AAACCTCTGCTCTTCTGTCCAGCGATGAACACGCGCATGTGGCAGCATCCAATCACCGAG 204923 Query 165335 CAGCATATAGAAACTCTTAA 165354 | ||| || ||||| ||||| Sbjct 204924 CGGCAGATCGAAACGCTTAA 204943 >seq5 Length=12895223 Score = 95.1 bits (104), Expect = 3e-14 Identities = 222/330 (67%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||| || | ||| | || |||||| ||| ||||| | |||||| | || ||| Sbjct 6100701 AAGAGCTGGAAACTGCCCACACCCACGATGACCTGTGGAACGCGGCCCAGCTGCAGCTGG 6100760 Query 238618 TAAGACTAGGCAAA-ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 | | | |||| || ||||| | || | || ||||||||||| || || ||||| || Sbjct 6100761 TGA-AGGAGGCCAAGATGCACGGGTTTCTGCGCATGTATTGGGCGAAGAAAATACTAGAG 6100819 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGA 238735 ||||| | | | || ||||||| | | || | | || ||||| |||||| ||| Sbjct 6100820 TGGACGAAAACGCCCGAGGAAGCGC-TCGAAACGGCCATCTATCTCAACGATCGCTACAG 6100878 Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795 || || || ||||| || |||||||| || || |||||||| || || | || Sbjct 6100879 CCTGGATGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCA 6100938 Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 ||| || |||| ||| | || ||||| ||| || | |||||||| || || || Sbjct 6100939 TGATCAGGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGG 6100998 Query 238856 AACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||| ||||| || || || || Sbjct 6100999 CTGCAAGCGAAAGTTTGACGTGAACGCGTT 6101028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393826789480