Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq9 89.7 4e-13 >seq4 Length=15719670 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || || |||||||| | Sbjct 4750555 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 4750614 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | ||||||||||||| ||| Sbjct 4750615 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 4750674 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| || || ||| | | | | || ||||| | | ||| Sbjct 4750675 GATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4750734 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 4750735 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 4750786 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||| || |||||||| || | || | || || | ||||||||||| Sbjct 15451501 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGC-CATCCTCCAGCTG 15451443 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||||| || | | |||||||||| || || Sbjct 15451442 CTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTT 15451383 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || || | | ||| ||| | || |||||||| ||||| Sbjct 15451382 GGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTTTTGCCGGT 15451323 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| |||||||| ||||||||||| Sbjct 15451322 GAGTGTTTTCACGAAAATCTGCAT 15451299 >seq9 Length=6651167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || | || || |||||||||||||||| ||| || Sbjct 534616 CTCCTTCTGGATGTTGTAGTCGGACAGAGTG-CGTCCGTCCTCCAGCTGCTTGCCGGCGA 534674 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| ||| | | ||||||||| || || ||||| Sbjct 534675 AGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 534734 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | || ||||| | | ||| ||| | || ||||| || || || || || |||| Sbjct 534735 TCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCA 534794 Query 48714 CAAAAATCTGCAT 48726 | ||||||||||| Sbjct 534795 CGAAAATCTGCAT 534807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249608460310