Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 8e-14
seq25 84.2 1e-11
seq3 84.2 1e-11
>seq1
Length=30017264
Score = 91.5 bits (100), Expect = 8e-14
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| | || ||||| | || |||||||||| |||||||||||||||||||||
Sbjct 16973153 AAAAAAAAGTAAATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 16973212
Query 11501 GACGCTCTRACCAACTGAGCTA 11522
|||||||| |||| ||||||||
Sbjct 16973213 GACGCTCTAACCAGCTGAGCTA 16973234
Score = 89.7 bits (98), Expect = 3e-13
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 6207437 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6207378
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 6207377 CTGAGCTA 6207370
Score = 87.8 bits (96), Expect = 9e-13
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| |||| | || |||||||||| ||||||||||||||||||||||||
Sbjct 17031035 AAAAAGGAAAACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 17030976
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||| |||||||| | ||||
Sbjct 17030975 GCTCTAACCAGCTGAGCTATGGAGCCG 17030949
Score = 87.8 bits (96), Expect = 9e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 17032379 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 17032320
Query 11514 ACTGAGCTAATGGGCCG 11530
|||||||| | ||||
Sbjct 17032319 GCTGAGCTATGGAGCCG 17032303
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 17033066 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 17033007
Query 11515 CTGAGCTAATGGGCCG 11530
|||||||| | ||||
Sbjct 17033006 CTGAGCTATGGAGCCG 17032991
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 6206543 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6206484
Query 11516 TGAGCTAATGGGCCG 11530
||||||| | ||||
Sbjct 6206483 TGAGCTATGGAGCCG 6206469
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 16876061 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 16876002
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 16876001 CTGAGCTA 16875994
Score = 82.4 bits (90), Expect = 4e-11
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 6237621 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6237680
Query 11516 TGAGCTA 11522
|||||||
Sbjct 6237681 TGAGCTA 6237687
>seq25
Length=1392011
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 490367 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 490426
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 490427 CTGAGCTA 490434
>seq3
Length=16089237
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 4766440 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4766381
Query 11516 TGAGCTAATGGGCCG 11530
||||||| | ||||
Sbjct 4766380 TGAGCTATGGAGCCG 4766366
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261490212053560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |