Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 161 2e-35 seq122 159 5e-35 >seq12 Length=3202847 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| || ||||||||||| || || || ||||| || ||| Sbjct 1848531 GCAAAGCGTCACCGAAAGGTTCTACGTGATAACATCCAGGGTATTACGAAGCCTGCCATC 1848590 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| |||||||| || |||||| | || || | ||||||| || | | Sbjct 1848591 CGTCGTCTGGCTCGCCGTGGTGGCGTAAAGCGTATATCCGGTCTCATCTATGAGGAAACT 1848650 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| ||||| | ||| ||| || | || || | ||| |||||| Sbjct 1848651 CGTGGAGTGCTGAAAGTCTTCTTGGAGAACGTGATTCGAGACGCCGTAACCTACACCGAG 1848710 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||||||||| || || | |||||| | || ||||| | || || || ||| Sbjct 1848711 CACGCCAAACGTAAGACCGTGACGGCGATGGATGTGGTATATGCTCTCAAGCGCCAGGGC 1848770 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || ||||| ||||| Sbjct 1848771 CGTACGCTGTACGGATTTGGTGGTTAA 1848797 >seq122 Length=8333 Score = 159 bits (176), Expect = 5e-35 Identities = 178/237 (75%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| ||||| || |||||||||||||| || ||||| || Sbjct 1561 CGCGATAACATCCAGGGCATCACGAAGCCGGCCATCCGTCGTCTGGCGCGCCGTGGCGGT 1502 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| ||| || |||| || || | |||| ||| ||||| | |||||| Sbjct 1501 GTGAAGCGTATCTCCGGACTGATCTACGAGGAAACGCGTGGTGTGCTGAAGGTGTTCCTC 1442 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||| || ||| ||||| ||||| || || ||||| |||| Sbjct 1441 GAGAACGTGATCCGCGATGCCGTCACCTACACCGAACACGCCAAGCGCAAGACCGTCA-- 1384 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||||||| |||| || || | || || || ||||| | | | || ||||| ||| Sbjct 1383 -CCATGGACGTCGTGTACGCTCTCAAGCGCCAGGGCCGCATGCTCTACGGTTTCGGA 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074916564830