Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq11 170 1e-37
seq71 107 1e-18
seq4 105 4e-18
>seq11
Length=6025392
Score = 170 bits (188), Expect = 1e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| ||| | ||||| |||||||| ||| | || |||||||| ||||| |||||
Sbjct 3662427 ATGGCAACCGTAAACGTGAATCGTAACGTGACTGATATCTTCTACCGGTACAAGATGCCT 3662486
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|||||| |||||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct 3662487 CGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGTATCAAGACGGTGATCGTAAACATG 3662546
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
| ||||| || ||| |||| || || || ||||||||||| || || || || |||
Sbjct 3662547 GCGGAAGTGGCCCGAGCGATCGGTCGTCCCGCTACCTACCCGACCAAGTACTTTGGTTGC 3662606
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|||||||| || || ||||||||||| |||||
Sbjct 3662607 GAACTTGGAGCGCAAACGCAGTTTGACCACAA 3662638
Score = 93.3 bits (102), Expect = 3e-14
Identities = 195/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
||||| |||||||| || || || |||| | | |||||||||||||| | | ||
Sbjct 3663402 AACGAACGCTTCATTGTGAATGGTGCGCACGATGCCGCCAAGCTGCAGGATCTGTTGGAT 3663461
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| || ||||| ||||| ||||| | ||| || || |||||||| || || || |
Sbjct 3663462 GGATTCATTCGTCGATTTGTCCTGTGCCCGGAGTGTGACAACCCGGAAACGGATCTGCTG 3663521
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
||||| | |||| || ||||| ||||| ||||| || || || | ||| ||
Sbjct 3663522 GTGTCGTCAAAGAAGGGTACGATCTCGCAGGGATGCAAGGCTTGTGGCTTCCACGGTCCC 3663581
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAA--AGACC 6612
|| || | ||||| | ||||| ||||| | ||||| ||||| || || |
Sbjct 3663582 CTCGAGGTGAATCACAAGGTGAACACGTTCATCATCAAGAA---CCCACCGAACGTGAAC 3663638
Query 6613 CTAGCACG-CAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659
| ||| | || ||| |||||| | || |||| ||| ||||||||
Sbjct 3663639 CCGGCAAGCCACGGTGCTTCGCTGACCGAGGGCAAGCGTAGCAAGCGC 3663686
>seq71
Length=24614
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 18134 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 18075
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||| |||
Sbjct 18074 GGTGATATTTAGCTTTA 18058
>seq4
Length=15719670
Score = 105 bits (116), Expect = 4e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || || | ||||| |||||| || |||||| || ||||||||||| ||
Sbjct 4750555 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 4750614
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| || | || || | || || ||||| || || || || || ||||| | ||
Sbjct 4750615 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 4750674
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| || || |||||| || ||| ||||||||||| || ||||| || ||
Sbjct 4750675 GATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4750734
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || |||||||| | |||||| ||||| |||||||| ||
Sbjct 4750735 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785
Score = 84.2 bits (92), Expect = 1e-11
Identities = 159/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|||||||| | | || | ||||| ||||| ||| ||||| || || ||||| ||
Sbjct 15451528 TTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC 15451469
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|||| | || | || || | || || ||||| || || || || || ||||| |
Sbjct 15451468 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGA 15451409
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|||| ||||| |||||| || || ||||||||| | || || || ||
Sbjct 15451408 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 15451349
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| || | || || ||||| || || | ||||||||||| ||||||||||||
Sbjct 15451348 ACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 15451295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945934527610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |