Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11 170 1e-37 seq71 107 1e-18 seq4 105 4e-18 >seq11 Length=6025392 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| |||||||| ||| | || |||||||| ||||| ||||| Sbjct 3662427 ATGGCAACCGTAAACGTGAATCGTAACGTGACTGATATCTTCTACCGGTACAAGATGCCT 3662486 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| |||||||| |||||||| ||||||||||| || || || || || |||||| Sbjct 3662487 CGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGTATCAAGACGGTGATCGTAAACATG 3662546 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || ||| |||| || || || ||||||||||| || || || || ||| Sbjct 3662547 GCGGAAGTGGCCCGAGCGATCGGTCGTCCCGCTACCTACCCGACCAAGTACTTTGGTTGC 3662606 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| || || ||||||||||| ||||| Sbjct 3662607 GAACTTGGAGCGCAAACGCAGTTTGACCACAA 3662638 Score = 93.3 bits (102), Expect = 3e-14 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || || || |||| | | |||||||||||||| | | || Sbjct 3663402 AACGAACGCTTCATTGTGAATGGTGCGCACGATGCCGCCAAGCTGCAGGATCTGTTGGAT 3663461 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || ||||| ||||| ||||| | ||| || || |||||||| || || || | Sbjct 3663462 GGATTCATTCGTCGATTTGTCCTGTGCCCGGAGTGTGACAACCCGGAAACGGATCTGCTG 3663521 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 ||||| | |||| || ||||| ||||| ||||| || || || | ||| || Sbjct 3663522 GTGTCGTCAAAGAAGGGTACGATCTCGCAGGGATGCAAGGCTTGTGGCTTCCACGGTCCC 3663581 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAA--AGACC 6612 || || | ||||| | ||||| ||||| | ||||| ||||| || || | Sbjct 3663582 CTCGAGGTGAATCACAAGGTGAACACGTTCATCATCAAGAA---CCCACCGAACGTGAAC 3663638 Query 6613 CTAGCACG-CAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 | ||| | || ||| |||||| | || |||| ||| |||||||| Sbjct 3663639 CCGGCAAGCCACGGTGCTTCGCTGACCGAGGGCAAGCGTAGCAAGCGC 3663686 >seq71 Length=24614 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 18134 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 18075 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||| ||| Sbjct 18074 GGTGATATTTAGCTTTA 18058 >seq4 Length=15719670 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | ||||| |||||| || |||||| || ||||||||||| || Sbjct 4750555 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 4750614 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 4750615 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 4750674 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || ||| ||||||||||| || ||||| || || Sbjct 4750675 GATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4750734 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 4750735 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | || | ||||| ||||| ||| ||||| || || ||||| || Sbjct 15451528 TTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC 15451469 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| | || | || || | || || ||||| || || || || || ||||| | Sbjct 15451468 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGA 15451409 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| |||||| || || ||||||||| | || || || || Sbjct 15451408 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 15451349 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | || || ||||| || || | ||||||||||| |||||||||||| Sbjct 15451348 ACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 15451295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945934527610