Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 147 2e-30 seq4 89.7 4e-13 >seq5 Length=12895223 Score = 147 bits (162), Expect = 2e-30 Identities = 319/471 (68%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| |||||| ||||| ||||| |||||||||| || | ||| |||||||||||| Sbjct 6101020 CACGTCAAACTTTCGCTTGCAGCCGTCGTAGTTCATGTAGCGAATTTTGCCAAAAATTTC 6100961 Query 51042 GCGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAAT 51100 || || || | |||| || || | ||| || |||||||| || || || || Sbjct 6100960 CCGCTCCTTCCA-TCCCTGATCATGGATGCCGGCGATCGACCACATGCACCCGACGTATC 6100902 Query 51101 TGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATG 51160 || |||||||| ||||||| |||||| ||||||| ||| | ||||| | | | Sbjct 6100901 CATTCGGATCGCGCCCATCCAGGCTGTAGCGATCGTTGAGATAGATGGCCGTTTCGAGCG 6100842 Query 51161 CCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220 | || | | |||||| || | |||||||| ||||| |||||||||| | | Sbjct 6100841 CTTCCTCGGGCGTTTTCGTCCACTCTAGTATTTTCTTCGCCCAATACATGCGCAGAAACC 6100782 Query 51221 CGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTG 51278 ||||||||||| |||| || | |||||| || |||| |||||||| || ||||| Sbjct 6100781 CGTGCATCTTGGCCTCCTTCACC--AGCTGCAGCTGGGCCGCGTTCCACAGGTCATCGTG 6100724 Query 51279 AGTTTGGCAACTTGCCAGCTCTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGTG 51338 || ||| | || |||||||| | |||| || || | ||| | ||| Sbjct 6100723 GGTGTGGGCAGTTTCCAGCTCTTCCCGCGTGTAGCAATACACACGCTTATCTTTGCGGTG 6100664 Query 51339 TTGCTCGATCGTTTCTTGAGCCCATTGTGGT--GCGCCTTCAACACAGTCGTAGCGGTCG 51396 | |||| |||| | ||||| || || || || | | ||||||| | Sbjct 6100663 ATCGTCGAGTGTTTTGCGCGCCCA--GTCGTACGCACCGGCCAGGTTGTCGTAGTTTTTA 6100606 Query 51397 TTGTAGAAACAAAAATTGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCG 51447 |||| ||| ||||| ||||| | ||||||||||||||| | |||| ||| Sbjct 6100605 TTGTGGAAGCAAAAGTTGTCCGACAGTTCGCGGCGTACGATCGCTTCCTCG 6100555 >seq4 Length=15719670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || ||||| |||| || | || || ||| | || Sbjct 4750782 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 4750723 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| ||| ||| ||||| || || || || || || || Sbjct 4750722 GATACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 4750663 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || |||||||||| Sbjct 4750662 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAT 4750603 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | ||||| Sbjct 4750602 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCT 4750571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326362832650