Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 246 3e-60 seq4 129 5e-25 seq9 98.7 8e-16 >seq14 Length=2944040 Score = 246 bits (272), Expect = 3e-60 Identities = 839/1281 (65%), Gaps = 41/1281 (3%) Strand=Plus/Minus Query 128809 GCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATG 128868 |||||||| |||||||||||||||||||| || |||||||| | ||||| | ||| | | Sbjct 128544 GCCGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTGAAAG 128485 Query 128869 TGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTT 128928 || |||| ||| | ||||| |||||| || || || || ||||| Sbjct 128484 TGGATCGAGGTTAGTTTACCGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGAC 128425 Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || || || || | || |||||||| ||||| || | |||| || || ||| Sbjct 128424 TGGTCGATGAACGCTCCACGATCGGCCGCCATTTGGATGCACGTTTTAACCGATATCTCC 128365 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCT 129047 || ||||||||||| || || | ||||| |||||||||| || || ||||| | || | Sbjct 128364 CAAACCGTTTTGTACAGATCGCGCACGTCCTTTGGTATTTTCTCTATTTTCTGGATCGAT 128305 Query 129048 GCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAA 129107 ||||||| ||| | ||| ||||| ||| | |||| ||| | | || ||| Sbjct 128304 -CCGTTGTGTGCCAGAATGGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAG 128246 Query 129108 ATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTA 129167 || | | ||| | | ||||| || ||||| || |||| | || || || ||| Sbjct 128245 GTCCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTA 128186 Query 129168 AATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGC 129227 | ||| ||| |||| || ||||| ||||||||||| | ||||||||| || | || Sbjct 128185 GACGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGC 128126 Query 129228 GGTGGGCATGTAAGCCACGCA-AAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCttttt 129286 || ||||| || | ||| || ||||| || | ||||||| | ||| | || | Sbjct 128125 TGTTGGCATCGGTGCTA-GCAGCAGTGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCT 128067 Query 129287 ttAATTGTGTCCAGTCCCACATCGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAA 129344 | || ||| | ||||| ||| || ||| | ||||||| |||||| |||| Sbjct 128066 TCAACGCCACCCAATTCCACA--GATCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAG 128009 Query 129345 TATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTT--TTGCC 129402 || ||| || | |||| ||| | |||| ||| | | ||| ||| Sbjct 128008 AATGCCCTTGCTTACCGGACAACCTTCGTACGTCTCGT--ACGGCCCATCCTTGGCGGCC 127951 Query 129403 AATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAA 129461 |||||||| || ||||||| || ||| | || || ||||| ||| |||| || | || Sbjct 127950 AATTCGCAGCTAGCTTCCAGCGCTCCATAGTAGATGGTTTC--AAATATTTGCTGATTAA 127893 Query 129462 CACTTTG-GCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAAC 129520 | || || || || || |||||||| | | || || || | ||||||| || Sbjct 127892 GCTTCTGCGCTTGCTCACTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATAC 127833 Query 129521 CTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGA---TTTTTGTGCCGACAACA 129577 | || | ||| | ||||| || || || | || || || | ||| || | Sbjct 127832 CCTGGACACCGATGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACC- 127774 Query 129578 AGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACG 129636 || |||||||| | ||| || || ||||| | ||| | || ||| || || | || Sbjct 127773 --GGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTGCGTG-TCACGATCTTGGCGACC 127717 Query 129637 TATTTTAACATTTCAAAATTGTACTCGCCTAC-ATCGATGTCGACAAA-TTGATTGACAC 129694 | || | | | || |||| ||| | ||| |||| | ||||| || | || | Sbjct 127716 TCCTTCAGCTTCTCGAAATCGTA----CGTACGATCGGGCTGCACAAACATGTTCAACGC 127661 Query 129695 AAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGG 129754 |||||||||||||||||| ||||| ||||| || || || || || || | Sbjct 127660 -AATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGAATATTCCACTATCTCAG 127602 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTT--TGATTACTTTTCATGTTGCA 129812 ||| | ||| ||| || ||||| |||| ||| || || ||||| ||||| Sbjct 127601 TGCAAAGGTTAGAGCATTTGATAGTGCC--AATGTTTTGCTGGTTGCTTTTGCGATTGCA 127544 Query 129813 AGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCT 129872 ||||| ||||||| ||||||||| ||||||||| || || | |||| || | Sbjct 127543 CGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAA 127484 Query 129873 GAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATA 129932 ||| ||| | ||||| | || | || ||| || |||||||||| || || Sbjct 127483 CCACAGATCTTGCGCCTTCACTTGACGTATAAAGCGACCCTCTTTCTCGTATCCCGTGTA 127424 Query 129933 CAGTTGTTCAAATTCT--GAGCCGTGTA-CGGTGTCGAGCAACGGCGATTCACGCGGACA 129989 ||| | || || ||| | || || | ||| | ||| || | || | || || Sbjct 127423 CAGCTTCTCGAACTCTTCGCCCCATGAATCGG---CCAGCCCGGGACAATCGTGGGGGCA 127367 Query 129990 CATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAG 130049 ||||||||||||| || ||| ||| || || || ||||| |||| ||| |||| |||||| Sbjct 127366 CATCAAACTCCACGTTTCATTCGCCTCCACACGCTTCATGAACAGATCCGGTATCCACAG 127307 Query 130050 GGCGTACAACAAATCTCGCGC 130070 ||||| |||| ||| || || Sbjct 127306 AGCGTAGAACATATCCCGAGC 127286 Score = 242 bits (268), Expect = 3e-59 Identities = 838/1281 (65%), Gaps = 41/1281 (3%) Strand=Plus/Minus Query 128809 GCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATG 128868 |||||||| |||||||||||||||||||| || |||||||| | ||||| | || | | Sbjct 113833 GCCGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTAAAAG 113774 Query 128869 TGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTT 128928 || |||| ||| | ||||| |||||| || || || || ||||| Sbjct 113773 TGGATCGAGGTTAGTTTACCGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGAC 113714 Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || || || || | || |||||||| ||||| || | |||| || || ||| Sbjct 113713 TGGTCGATGAACGCTCCACGATCGGCCGCCATTTGGATGCACGTTTTAACCGATATCTCC 113654 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCT 129047 || ||||||||||| || || | ||||| |||||||||| || || ||||| | || | Sbjct 113653 CAAACCGTTTTGTACAGATCGCGCACGTCCTTTGGTATTTTCTCTATTTTCTGGATCGAT 113594 Query 129048 GCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAA 129107 ||||||| ||| | ||| ||||| ||| | |||| ||| | | || ||| Sbjct 113593 -CCGTTGTGTGCCAGAATGGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAG 113535 Query 129108 ATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTA 129167 || | | ||| | | ||||| || ||||| || |||| | || || || ||| Sbjct 113534 GTCCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTA 113475 Query 129168 AATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGC 129227 | ||| ||| |||| || ||||| ||||||||||| | ||||||||| || | || Sbjct 113474 GACGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGC 113415 Query 129228 GGTGGGCATGTAAGCCACGCA-AAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCttttt 129286 || ||||| || | ||| || ||||| || | ||||||| | ||| | || | Sbjct 113414 TGTTGGCATCGGTGCTA-GCAGCAGTGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCT 113356 Query 129287 ttAATTGTGTCCAGTCCCACATCGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAA 129344 | || ||| | ||||| ||| || ||| | ||||||| |||||| |||| Sbjct 113355 TCAACGCCACCCAATTCCACA--GATCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAG 113298 Query 129345 TATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTT--TTGCC 129402 || ||| || | |||| ||| | |||| ||| | | ||| ||| Sbjct 113297 AATGCCCTTGCTTACCGGACAACCTTCGTACGTCTCGT--ACGGCCCATCCTTGGCGGCC 113240 Query 129403 AATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAA 129461 |||||||| || ||||||| || ||| | || || ||||| ||| |||| || | || Sbjct 113239 AATTCGCAGCTAGCTTCCAGCGCTCCATAGTAGATGGTTTC--AAATATTTGCTGATTAA 113182 Query 129462 CACTTTG-GCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAAC 129520 | || || || || || |||||||| | | || || || | ||||||| || Sbjct 113181 GCTTCTGCGCTTGCTCACTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATAC 113122 Query 129521 CTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGA---TTTTTGTGCCGACAACA 129577 | || | ||| | ||||| || || || | || || || | ||| || | Sbjct 113121 CCTGGACACCGATGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACC- 113063 Query 129578 AGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACG 129636 || |||||||| | ||| || || ||||| | ||| | || ||| || || | || Sbjct 113062 --GGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTGCGTG-TCACGATCTTGGCGACC 113006 Query 129637 TATTTTAACATTTCAAAATTGTACTCGCCTAC-ATCGATGTCGACAAA-TTGATTGACAC 129694 | || | | | || |||| ||| | ||| |||| | ||||| || | || | Sbjct 113005 TCCTTCAGCTTCTCGAAATCGTA----CGTACGATCGGGCTGCACAAACATGTTCAACGC 112950 Query 129695 AAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGG 129754 |||||||||||||||||| ||||| ||||| || || || || || || | Sbjct 112949 -AATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGAATATTCCACTATCTCAG 112891 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTT--TGATTACTTTTCATGTTGCA 129812 ||| | ||| ||| || ||||| |||| ||| || || ||||| ||||| Sbjct 112890 TGCAAAGGTTAGAGCATTTGATAGTGCC--AATGTTTTGCTGGTTGCTTTTGCGATTGCA 112833 Query 129813 AGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCT 129872 ||||| ||||||| ||||||||| ||||||||| || || | |||| || | Sbjct 112832 CGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAA 112773 Query 129873 GAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATA 129932 ||| ||| | ||||| | || | || ||| || |||||||||| || || Sbjct 112772 CCACAGATCTTGCGCCTTCACTTGACGTATAAAGCGACCCTCTTTCTCGTATCCCGTGTA 112713 Query 129933 CAGTTGTTCAAATTCT--GAGCCGTGTA-CGGTGTCGAGCAACGGCGATTCACGCGGACA 129989 ||| | || || ||| | || || | ||| | ||| || | || | || || Sbjct 112712 CAGCTTCTCGAACTCTTCGCCCCATGAATCGG---CCAGCCCGGGACAATCGTGGGGGCA 112656 Query 129990 CATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAG 130049 ||||||||||||| || ||| ||| || || || ||||| |||| ||| |||| |||||| Sbjct 112655 CATCAAACTCCACGTTTCATTCGCCTCCACACGCTTCATGAACAGATCCGGTATCCACAG 112596 Query 130050 GGCGTACAACAAATCTCGCGC 130070 ||||| |||| ||| || || Sbjct 112595 AGCGTAGAACATATCCCGAGC 112575 >seq4 Length=15719670 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 4750785 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4750726 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || ||| || || |||||||||||||| || || ||| Sbjct 4750725 TCGGATACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 4750666 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | ||||||||| Sbjct 4750665 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 4750606 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || ||| | ||| | || | || ||||||| ||| Sbjct 4750605 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGT 4750555 >seq9 Length=6651167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||||| || || || | | Sbjct 534807 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 534748 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 534747 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 534688 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||||| |||||| Sbjct 534687 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 534628 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || ||| | || | ||||| || Sbjct 534627 ATCCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGGCTTCGCGGTGG 534581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726414215150