Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 176 8e-39 seq1 172 1e-37 seq4 158 2e-33 seq3 95.1 2e-14 >seq2 Length=22738934 Score = 176 bits (194), Expect = 8e-39 Identities = 318/465 (68%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 ||||||||||||||| ||||| || |||||||| || ||||| | || | || || Sbjct 20260572 CCACATTGCTTCGACGTAGTCTTTTGCGTGGCCCCAGTCACGCTTCGAATCGAGATTACC 20260631 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 ||| | ||| | ||||| ||||||| | || | |||||||||||| || Sbjct 20260632 GAGCTCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTACG 20260691 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 ||||| || |||| || || | || ||||||||| ||||| || |||||||| || Sbjct 20260692 CGTCACAAAGTTCTCACCTCGCCGGGGCGACTCGTGGTTAAAGAGAATACCGTTGCAAGC 20260751 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| || ||||| || || || | || ||||||| | |||| || ||| Sbjct 20260752 AAACATGTTGTACGCCTCGCGATAATTGATCACTATCCAGTAGCCGTACATTTTCGCACA 20260811 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || || | || || || |||| || || Sbjct 20260812 CGCGTACGGCGATCGCGGATAGAATGGAGTTTTTTCGTTCTGCGGCGTTTCGACCACCTT 20260871 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 |||| |||| ||||| || || ||||||||||| || || || | || | | Sbjct 20260872 GCCATAGAGTTCGGACGTGGACGCTTGGTAGAAGCGGACCGTCTTCTCCTGTCCAACGGT 20260931 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || || |||| || || || || | ||||||| ||||| ||||| || Sbjct 20260932 ACGGATGGCATCAAGCAGCCGCAGCGTACCGACCGCATCCACTTCCGCCGTATATTCGCT 20260991 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 || ||||| || | || ||||||||| || ||| | ||||| || Sbjct 20260992 CAGGTCGAACGAGATCTTGACATGGCTTTGCGCGGCAAGGTTGTA 20261036 >seq1 Length=30017264 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||| ||||| || || || | |||| ||| || |||||||| || ||||| || | Sbjct 15159542 TTTAAAAGCCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGT 15159601 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | |||||||| | |||||| |||||||| || || | || || | Sbjct 15159602 AGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGAT 15159661 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || ||||||||||| || |||||||| ||||| ||| |||||||||||| | || Sbjct 15159662 CCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATG 15159721 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 15159722 GCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 15159776 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || || |||||||| || || || || | | | ||||| || ||| Sbjct 15157291 TGGAGAGTGGAATCCTTCTGGATGTTGTAGTCTGACAGAATACGTCTATCTTTCAAATGC 15157350 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 | ||| ||| | || | || || || || || ||||||||||| | ||||||||| Sbjct 15157351 ATTCCGCTGAAGACCAGACGCTGGTGATCCGGAGGGATGCCTTCCTTACCCTGAATCTTT 15157410 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||||||| | | ||||| |||| |||||||| ||||| | Sbjct 15157411 GCCTTCACGATCTCGATGGTGTCCGACGGCTCTACCTCCAGCGTGATGGTCTTTCCGTTC 15157470 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| || || || Sbjct 15157471 ATAGTTTTGACGAAGATTTGTAT 15157493 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326 ||| || || ||||| || || || || || | | |||||||| | | ||| ||||| Sbjct 15157071 GGATTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGC 15157130 Query 68327 GAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||| || || || | | || |||||||||| | |||||||| ||||| || Sbjct 15157131 GAAGTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCAC 15157190 Query 68387 GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 | |||||||||||| | || ||| ||||||| |||||||| ||||| || || || || Sbjct 15157191 GATCTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTT 15157250 Query 68447 GACGAATATCTGCA 68460 |||||| || |||| Sbjct 15157251 GACGAAGATTTGCA 15157264 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 |||||| || | || |||||||||||||| |||||||| ||||| ||| ||||||||| Sbjct 15156915 TTGTTGATCCGCAGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATGGT 15156974 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 ||| | || || || |||| |||||||| ||||| || || ||||| | || || || Sbjct 15156975 GTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTAATAAAGATTTG 15157034 Query 68459 CAT 68461 ||| Sbjct 15157035 CAT 15157037 >seq4 Length=15719670 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || ||||| || |||||||| Sbjct 4750556 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4750615 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || || Sbjct 4750616 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4750675 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||||||||| || |||||| || || | | || || Sbjct 4750676 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4750735 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 4750736 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || || | |||| ||| || ||||| || || |||||||| || Sbjct 15451531 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAG 15451472 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || || | ||||| || | |||||| |||||||| || || | || || || Sbjct 15451471 TCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCC 15451412 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || ||||||||||| || ||||| ||||| || ||||| ||||| | | Sbjct 15451411 GGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGC 15451352 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||||| || ||||| || || ||||| |||||||| Sbjct 15451351 TCGACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 15451299 >seq3 Length=16089237 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 195991 TTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGA 196050 |||||| | ||||||||||| ||||||||| |||| | | ||||||| |||||||| Sbjct 15590512 TTGGGTGATTTTTGACGAAATTCACTACATGCGCGACAAGGAGCGTGGTGTGGTGTGGGA 15590571 Query 196051 AGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCC 196110 ||||| |||||||| | ||||| | | | | || || || |||||||||| | || Sbjct 15590572 AGAAACGCTTATCCTGCTGCCGGACAACGTGCACTACGTGTTCCTGTCCGCGACGATCCC 15590631 Query 196111 CAACGCCCGTGACTTTGCCTTGTGG 196135 ||||| || | |||||| |||| Sbjct 15590632 GAACGCACGGCAGTTTGCCGAGTGG 15590656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618828713200