Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq9 113 1e-21 >seq9 Length=6651167 Score = 113 bits (124), Expect = 1e-21 Identities = 214/313 (68%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257 |||||||||||||||||| |||||||| ||| |||||| | ||||||| | || | Sbjct 5827343 CTGCGAGCTGCTAAACTTCGTCAACGTGCTCGGACAGATCTACTTCATGGACTTTTTCCT 5827284 Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG---GAAGCCGC 3314 | || ||| || | |||||| | | |||| ||||| | || ||| ||| Sbjct 5827283 GGACGGAGAGTTCACGACGTACGGTAGCGATGTGGTGCGCTTCACCGAGATGGAACCCGA 5827224 Query 3315 CCATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTT 3374 || | || ||| || ||| ||| || ||||| | | | || ||||| || Sbjct 5827223 G-----GAGCGTGGCGATCCG-ATGGCGCGCGTGTTTCCGAAAGTGACCAAGTGTACCTT 5827170 Query 3375 TCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGA 3434 ||||| |||||||| || || || | || | ||| || || ||| | | ||| Sbjct 5827169 CCACAAGTACGGTCCGTCCGGTAGTGTGCAGAAGTTCGACGGTCTGTGCGTGTTGCCGCT 5827110 Query 3435 GAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCAT 3494 |||| | |||||||||||||||||| | ||||| |||||||||||| |||| |||| Sbjct 5827109 GAACATCGTCAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATTCTGCTGACCAT 5827050 Query 3495 CATCAGCGGTATC 3507 | ||| ||| ||| Sbjct 5827049 CCTCACCGGCATC 5827037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479957685000