Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq1 87.8 2e-12 >seq4 Length=15719670 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| |||| | || | || | || ||||| || || |||||||| || Sbjct 15451527 TACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCG 15451468 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || ||| || ||| || || || || || ||| |||| |||||||| || ||||||| Sbjct 15451467 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 15451408 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | || ||||| ||||| ||||| || | | ||| | ||||| | || |||| Sbjct 15451407 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGA 15451348 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || | || | ||||||||||| || ||||| || |||||||||||| Sbjct 15451347 CCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 15451298 >seq1 Length=30017264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || ||||| || || ||||| |||||| || || || || Sbjct 15159580 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCG 15159639 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || |||||||| |||||||| || || |||||| || Sbjct 15159640 GCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTC 15159699 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || |||| || | || || ||||||||||| Sbjct 15159700 ACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTC 15159759 Query 114366 TTTACAAAAATCTGCATG 114383 || || || || |||||| Sbjct 15159760 TTGACGAAGATTTGCATG 15159777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132812679720