Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 302 8e-77 seq14 242 7e-59 >seq2 Length=22738934 Score = 302 bits (334), Expect = 8e-77 Identities = 430/601 (72%), Gaps = 7/601 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||| || || |||||||| |||| | |||| Sbjct 19672464 CTTGCCTTCTTCGCCGCCTCGGACGGTATCGTAAATGAGAATCTGGTGGAGCGCTTCAGC 19672405 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| ||||| |||||||||||||| || ||||| || || |||||| Sbjct 19672404 CAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAAC 19672345 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 |||||| || ||||| | ||| || |||||||||| | || || ||||| Sbjct 19672344 GTGCACAGCGAAATGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGG 19672285 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||||| || || || ||| |||| ||| | ||||||||||| ||||||||| Sbjct 19672284 GAGTATCTGTTCAACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCG 19672225 Query 42663 CTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 || ||||||||| || | || | |||| || || ||| | |||| || || | | Sbjct 19672224 CTGAACTGGATCTCCAG-CAAGAAGGCCAAC-TTTGGGGAGCGTGTGGTTGCGTTCGCTG 19672167 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 | ||||||||||||||||| ||| ||| || ||||||||||||| ||| || | Sbjct 19672166 CAGTCGAGGGCATCTTCTTTAGTGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGCG 19672107 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 ||||| || || || ||||||||||| || ||| | |||||||| ||||| Sbjct 19672106 GCCTAATGCCGGGGCTGACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACT 19672047 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | |||||||||||||| ||||| | | || ||| || || ||||||||||| | Sbjct 19672046 GTGACTTTGCCTGCCTGATGTTC---CGGTATCTGGTGCAGAAACCGTCGAAGGAGCGCG 19671990 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | || |||||| || || || | ||||||| |||||||||| ||| || | |||| Sbjct 19671989 TGACGGAGATCATCCGCGATGCGGTCGTGATCGAGCAGGAGTTCCTGACGAAGGCACTGC 19671930 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | || | || ||||||||||| ||| || |||| ||||||| ||| ||| || | Sbjct 19671929 CGGTCGACATGCTCGGCATGAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCGG 19671870 Query 43021 A 43021 | Sbjct 19671869 A 19671869 >seq14 Length=2944040 Score = 242 bits (268), Expect = 7e-59 Identities = 937/1444 (65%), Gaps = 66/1444 (5%) Strand=Plus/Minus Query 244074 CCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGA 244133 ||| || ||| || ||| || ||||||||||| ||||| ||||| || || | ||||| Sbjct 113532 CCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGA 113473 Query 244134 GGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAG 244193 ||| || ||| |||| ||| ||||||||||||| || || || || | Sbjct 113472 CGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTG 113413 Query 244194 TCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA 244253 | ||||| || | | |||||| ||| | | ||||||| | ||| | ||| Sbjct 113412 TTGGCATCGGTGCTAGCAGCAGTGAGTTACGAATGCCGTGCTT-----TGC--AATCTTT 113360 Query 244254 GCTCGTTCCAGTCC-CACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAA 244311 || ||| | || | || || | || ||| ||| ||| | ||||||||| | Sbjct 113359 --TCCTTCAACGCCACCCAATTCC-ACAGATCCGTCG-GTTCCTTGTTCCACATGTCGTA 113304 Query 244312 CTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG 244371 |||||| | |||||||| || || | || ||||| ||| ||| || || || Sbjct 113303 CTGCAGAATGCCCTTGCTTACCGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGC 113244 Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 ||||| | ||||| | || || || | ||||||||||| || || || || || Sbjct 113243 GGCCAATTCGCAGCTAGCTTCCAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATT 113184 Query 244432 CATGTCGCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCA 244490 | | | || |||| | | | | || | |||||||| ||||| | ||||||| Sbjct 113183 AAGCTTCTGCGC-TTGCTCACTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCA 113125 Query 244491 GTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCA 244550 ||||| || ||||||||||| || | ||| ||| |||| |||||| | ||||| |||| Sbjct 113124 TACCCTGGACACCGATGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCA 113065 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGT 244610 | ||||| |||| |||| || | |||||| || ||||| || | || | |||| | Sbjct 113064 CCGGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCT 113005 Query 244611 CGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACT 244670 | |||| || || ||||| |||| |||| | | | ||||||| Sbjct 113004 CCTTCAGCTTCTCGAAATCGTA--CGTA-----------CGATCGGG--CTGCACAAACA 112960 Query 244671 CGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730 ||| | || | ||||| ||||| |||||||| || ||| | || | | Sbjct 112959 TGTTCAACGCAATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGAATATTCCA 112900 Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790 | ||||| ||||| |||||| ||| ||||| ||||| | || || || ||| ||| Sbjct 112899 CTATCTCAGTGCAAAGGTTAGAGCATTTGATAGTGCCAATGTTTTGCTGGTTGCTTTTGC 112840 Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||||| || |||||||| |||||| | || | || || || | ||| | ||| || Sbjct 112839 GATTGCACGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGA 112780 Query 244851 -CGCTGTTCCAGAGGTCCCTAGCCTTGAC-CGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 ||| ||| || || ||||| || | | | | | |||||| |||||| Sbjct 112779 TCGC-AAACCACAGATCTTGCGCCTTCACTTGACGTATAAAGC-GACCCTCTTTCTCGTA 112722 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGAC 244966 | |||||||| ||||||||| |||||| ||| | || ||||| || || Sbjct 112721 TCCCGTGTACAGCTTCTCGAACTCTTCGCCCCATGAATCGGCCAGCCCGGGACAATCGTG 112662 Query 244967 GCCGGGCACATGAGACTCCAC-TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 | |||||||| | ||||||| | | || ||| || | || |||||| || || || Sbjct 112661 G--GGGCACATCAAACTCCACGTTTCATTCG-CCTCCACACGCTTCATGAACAGATCCGG 112605 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 ||||| || || | ||| | |||| | | ||| ||| ||| ||||| ||| | Sbjct 112604 TATCCACAGAGCGTAGAACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGTTTTTCTT 112545 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 ||| |||| ||| ||||| || || | ||||| || || | ||||| ||| | ||||| Sbjct 112544 CAGATCCAGAAACTCAAACACATCACCATGCCACGGTTCGAGGTAGATAGCAAACGCGCC 112485 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGT 245205 || ||||| || || ||||| || || ||| | |||| | | || || | Sbjct 112484 TGGGCGCTTATTACCGCCCTGATCAACGTACCTTGCCGTGTTGTTGTACACACGTAGCAT 112425 Query 245206 AGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAG 245265 || || | ||||| || ||||| ||||| |||||| | ||||| | | | Sbjct 112424 CGGTACCAGCCCGTTCGAAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCGCAC---G 112368 Query 245266 GTTGCTGATGGACATGCCTAGTCCG------CCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | ||| | || |||| | |||||| ||||| || ||||| | ||||| Sbjct 112367 GATGCAG-TGCACATTC--AGTCCGATACCACCGGCCGATTTCGAGATCAATGCGCATTG 112311 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCT---GTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | || || || || || ||||| |||||| |||| | ||||||||||| Sbjct 112310 CTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCCGA---CATGGTCAGCAGAAAGCA 112254 Query 245377 GGAGGACAGCTGGG---GCT-TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGG 245432 || || ||||| | ||| || ||| || || |||| || || ||||||| Sbjct 112253 AGAAGAAAGCTGAGGACGCTGTGTGGCCGC-CG---CAAACATGGTCGGAGAAGCGTGGG 112198 Query 245433 TAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGT 245492 ||||||| || ||| || | |||||||| || | || || |||| ||||||| Sbjct 112197 TAAAGTAACGCTCCGAAAGCAGATTGTACGTCTCGATCGCTGCCTCAATGTCCTCGCCGT 112138 Query 245493 GGAT 245496 |||| Sbjct 112137 GGAT 112134 Score = 242 bits (268), Expect = 7e-59 Identities = 939/1445 (65%), Gaps = 68/1445 (5%) Strand=Plus/Minus Query 244074 CCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGA 244133 ||| || ||| || ||| || ||||||||||| ||||| ||||| || || | ||||| Sbjct 128243 CCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGA 128184 Query 244134 GGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAG 244193 ||| || ||| |||| ||| ||||||||||||| || || || || | Sbjct 128183 CGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTG 128124 Query 244194 TCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA 244253 | ||||| || | | |||||| ||| | | ||||||| | ||| | ||| Sbjct 128123 TTGGCATCGGTGCTAGCAGCAGTGAGTTACGAATGCCGTGCTT-----TGC--AATCTTT 128071 Query 244254 GCTCGTTCCAGTCC-CACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAA 244311 || ||| | || | || || | || ||| ||| ||| | ||||||||| | Sbjct 128070 --TCCTTCAACGCCACCCAATTCC-ACAGATCCGTCG-GTTCCTTGTTCCACATGTCGTA 128015 Query 244312 CTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG 244371 |||||| | |||||||| || || | || ||||| ||| ||| || || || Sbjct 128014 CTGCAGAATGCCCTTGCTTACCGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGC 127955 Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 ||||| | ||||| | || || || | ||||||||||| || || || || || Sbjct 127954 GGCCAATTCGCAGCTAGCTTCCAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATT 127895 Query 244432 CATGTCGCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCA 244490 | | | || |||| | | | | || | |||||||| ||||| | ||||||| Sbjct 127894 AAGCTTCTGCGC-TTGCTCACTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCA 127836 Query 244491 GTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCA 244550 ||||| || ||||||||||| || | ||| ||| |||| |||||| | ||||| |||| Sbjct 127835 TACCCTGGACACCGATGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCA 127776 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGT 244610 | ||||| |||| |||| || | |||||| || ||||| || | || | |||| | Sbjct 127775 CCGGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCT 127716 Query 244611 CGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACT 244670 | |||| || || ||||| |||| |||| | | | ||||||| Sbjct 127715 CCTTCAGCTTCTCGAAATCGTA--CGTA-----------CGATCGGG--CTGCACAAACA 127671 Query 244671 CGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730 ||| | || | ||||| ||||| |||||||| || ||| | || | | Sbjct 127670 TGTTCAACGCAATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGAATATTCCA 127611 Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790 | ||||| ||||| |||||| ||| ||||| ||||| | || || || ||| ||| Sbjct 127610 CTATCTCAGTGCAAAGGTTAGAGCATTTGATAGTGCCAATGTTTTGCTGGTTGCTTTTGC 127551 Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||||| || |||||||| |||||| | || | || || || | ||| | ||| || Sbjct 127550 GATTGCACGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGA 127491 Query 244851 -CGCTGTTCCAGAGGTCCCTAGCCTTGAC-CGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 ||| ||| || || ||||| || | | | | | |||||| |||||| Sbjct 127490 TCGC-AAACCACAGATCTTGCGCCTTCACTTGACGTATAAAGC-GACCCTCTTTCTCGTA 127433 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGAC 244966 | |||||||| ||||||||| |||||| ||| | || ||||| || || Sbjct 127432 TCCCGTGTACAGCTTCTCGAACTCTTCGCCCCATGAATCGGCCAGCCCGGGACAATCGTG 127373 Query 244967 GCCGGGCACATGAGACTCCAC-TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 | |||||||| | ||||||| | | || ||| || | || |||||| || || || Sbjct 127372 G--GGGCACATCAAACTCCACGTTTCATTCG-CCTCCACACGCTTCATGAACAGATCCGG 127316 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 ||||| || || | ||| | |||| | | ||| ||| ||| ||||| ||| | Sbjct 127315 TATCCACAGAGCGTAGAACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGTTTTTCTT 127256 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 ||| |||| ||| ||||| || || | ||||| || || | ||||| ||| | ||||| Sbjct 127255 CAGATCCAGAAACTCAAACACATCACCATGCCACGGTTCGAGGTAGATAGCAAACGCGCC 127196 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGT 245205 || ||||| || || ||||| || || ||| | |||| | | || || | Sbjct 127195 TGGGCGCTTATTACCGCCCTGATCAACGTACCTTGCCGTGTTGTTGTACACACGTAGCAT 127136 Query 245206 AGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAG 245265 || || | ||||| || ||||| ||||| |||||| | ||||| | | | Sbjct 127135 CGGTACCAGCCCGTTCGAAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCGCAC---G 127079 Query 245266 GTTGCTGATGGACATGCCTAGTCCG------CCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | ||| | || |||| | |||||| ||||| || ||||| | ||||| Sbjct 127078 GATGCAG-TGCACATTC--AGTCCGATACCACCGGCCGATTTCGAGATCAATGCGCATTG 127022 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCT---GTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | || || || || || ||||| |||||| |||| | ||||||||||| Sbjct 127021 CTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCCGA---CATGGTCAGCAGAAAGCA 126965 Query 245377 GGAGGACAGCTGGG---GCT-TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGG 245432 || || ||||| | ||| || ||| || || |||| || || ||||||| Sbjct 126964 AGAAGAAAGCTGAGGACGCTGTGTGGCCGC-CG---CAAACATGGTCGGAGAAGCGTGGG 126909 Query 245433 TAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCG 245491 ||||||| | |||| || || | |||||||| || | || || |||| |||||| Sbjct 126908 TAAAGTAAC-GCTCTGAAAGCAGATTGTACGTCTCGATCGCTGCCTCAATGTCCTCGCCG 126850 Query 245492 TGGAT 245496 ||||| Sbjct 126849 TGGAT 126845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335540685600